Paracidovorax avenae: Acav_4446
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Entry
Acav_4446 CDS
T01445
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aaa
Paracidovorax avenae
Pathway
aaa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aaa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Acav_4446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aaa03021
]
Acav_4446
03400 DNA repair and recombination proteins [BR:
aaa03400
]
Acav_4446
Enzymes [BR:
aaa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Acav_4446
Transcription machinery [BR:
aaa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Acav_4446
DNA repair and recombination proteins [BR:
aaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Acav_4446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ADX48329
UniProt:
F0Q8L6
LinkDB
All DBs
Position
complement(5084181..5088416)
Genome browser
AA seq
1411 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFDAIRIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFGIMSEDDHDAKRKEYGDEFIAKM
GAEGIKDLLEGIDIDLEIEKLRGDLTGSEVKVKKNAKRLKVLEAFKKSGIKPEWMVLDVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPTLK
LHQCGLPKLMALELFKPFIFSRLEQMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEART
LMLASNNVLFPASGEPSIVPSQDVVLGLYHATRDKINGKGEGLIFSDTGEVQRALDAGQA
ELHARISVRLTEWTKDKATGEFVPSTSLVDTTVGRALLSEILPKGLPFSNINKSLKKKEI
SKLINVSFRKCGLKETVVFADKLLQNGFRLATRAGFSVAIDDMLVPPQKADILARAESEV
KEIEQQYVSGLVTAGERYNKVVDIWGKAGDDVSKVMMDQLKVEKTTDRHGKEVNQESFNA
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEEDCGTSNGSVMRAIVEGGEVIESLRDRVLG
RSTAEEVLHPETRAVLVPAGQMLDEDTLEELEAAGVDEVKVRTALTCETRYGLCAKCYGR
DLGRGGLINLGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGVIGFN
ATMRYVTNSKGELVVIARSGEVIIQDEHGRERERHKVPYGATLTVKADQQVKAGTILANW
DPLTRPIITEFAGQVKFENIEEGLTVAKQVDDVTGLSTLVVIDPKRRGSAKVVRPQVKLV
DANGAEVKIPGTDHSVTIGFQVGALIQVRDGQDVGPGEVLARIPVEGQKTRDITGGLPRV
AELFEARSPKDKGMLAEITGTVSFGKETKGKVRLQITDPDGKVWDELVPKEKNVLVHEGQ
VVNKGELIVDGPADPQDILRLLGIEELSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENPGESGYIAGEQVERSEILNTNEQLQSEDKIPATYSNVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHQARKAKEAMDDAERRA
IAEAEAAEMATTGPDEAPEVEGSGVESGSAE
NT seq
4236 nt
NT seq
+upstream
nt +downstream
nt
atgaagtctctactcgacctgttcaagcaattcacgccggacgagcatttcgatgccatc
cgcatcggcatggcgtcgccggagaagatccgttcctggtccttcggcgaggtgaagaag
cccgagacgatcaactaccgcacgttcaagcccgagcgcgacggcctgttctgcgccaag
atcttcggcccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcac
cgcggcgtgatctgcgagaagtgcggcgtggaagtgacccagaccaaggtgcgccgcgag
cgcatgggccacatcgacctggccgcaccttgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcctggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtat
ttcgaagcctacgtggtgaccgaccccggcatgaccccgctgaagaagttcggcatcatg
tccgaggacgaccatgacgcgaagcgcaaggaatacggcgacgagttcatcgccaagatg
ggcgcggaaggcatcaaggacctgctcgaaggcatcgacatcgacctggagatcgagaag
ctgcgcggcgacctgaccggctccgaagtcaaggtgaagaagaacgccaagcgcctgaag
gtgctggaagcgttcaagaagtcgggcatcaagcccgagtggatggtgctggacgtgctg
cccgtgctgccgccggacctgcgtccgctggtgccactggacggtggccgcttcgcgacc
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaactcgcgccttcgccgcctg
ctggagctgaaggctccggagatcatcgcgcgcaacgagaagcggatgctgcaggaagcc
gtcgattcgctgctggacaacggccgccgcggcaaggcgatgacgggcgccaacaagcgc
gcgctgaagtcgctggccgacatgatcaagggcaagtccggccggttccgccagaacctg
ctgggcaagcgggtggactattccggccgttccgtgatcaccgtgggcccgacgctcaag
ctgcaccagtgcggcctgccgaagctgatggccctggagctgttcaagcccttcatcttc
tcgcgcctcgagcagatgggcatcgccacgaccatcaaggcggcgaagaaggaagtcgaa
tccggcacgccggtggtctgggacatcctggaagaggtcatcaaggagcacccggtcatg
ctgaaccgtgctccgacgctgcaccgcctgggcatccaggccttcgagccgatcctgatc
gaaggcaaggccatccagctgcacccgctcgtctgcgcggccttcaacgccgacttcgac
ggtgaccagatggccgtccacgtgccgctgtcggtggaagcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttccccgcttcgggcgagccctccatcgtgcct
tcgcaggacgtggtgctgggtctctaccacgcgacccgcgacaagatcaacggcaagggc
gaaggcctgatcttctccgacacgggcgaagtccagcgagcgctggatgccggccaggcg
gagctgcatgcccgcatcagcgtgcgcctgaccgaatggaccaaggacaaggccacgggc
gagttcgtgccctcgacctcgctggtcgacacgaccgtcggccgtgcactcctgtccgag
atcctgcccaagggcctgcccttcagcaacatcaacaagtcgctgaagaagaaggaaatc
tccaagctcatcaacgtgagcttccgcaagtgcggcctgaaggaaaccgtggtgttcgcg
gacaagctgctgcagaacggcttccgcctggccacgcgcgccggcttctcggtggcgatc
gacgacatgctggtgcccccgcagaaggcggacatcctggcacgcgccgaatccgaagtg
aaggagatcgagcagcagtacgtctccggcctggtgacggccggcgagcgctacaacaag
gtggtggacatctggggcaaggccggcgacgacgtgtccaaggtgatgatggaccagctc
aaggtcgagaagaccaccgaccgccacggcaaggaagtgaaccaggagtccttcaacgcc
atctacatgatggccgactcgggcgcccggggttccgcagcgcagatccgccagctggcc
ggcatgcgcggcctgatggccaagccggacggctccatcatcgagacccccatcacggcg
aacttccgtgaaggcctgaacgtgctgcagtacttcatctccacccacggtgcccggaag
ggcctggcggatacggcgctgaagaccgcgaactccggctacctcacccgccgcctggtg
gacgtgacgcaggatctcgtggtgaccgaagaggactgcggcacgagcaacggttcggtg
atgcgcgccatcgtcgaaggcggtgaagtgatcgagtccctgcgcgaccgcgtgctcggc
cgctccacggccgaagaggtgctgcaccccgaaacccgtgccgtgctggtgccggccggc
cagatgctggacgaggacaccctcgaagagctggaagccgccggcgtggacgaggtgaag
gtgcgtaccgcactgacctgcgagacgcgctacggcctctgcgccaagtgctatggccgc
gacctgggccgtggcggcctgatcaacctcggcgaagccgtgggcgtgatcgctgcccag
tccatcggcgaacccggcacgcagctgaccatgcgtacgttccacatcggtggtgccgct
tcgcgtgccgccatcgcttcgagcgtggaagccaagtccaacggcgtgatcggcttcaat
gccacgatgcgctacgtgaccaacagcaagggcgagctggtcgtcatcgcacgttcgggt
gaagtcatcatccaggacgagcatggccgcgagcgcgagcgtcacaaggtgccgtacggc
gcgacgctgacggtgaaggccgaccagcaggtcaaggccggcacgatcctggccaactgg
gatccgctgacgcgaccgatcatcacggaattcgccggccaggtgaagttcgagaacatc
gaggaaggcctcaccgtcgccaagcaggtggacgatgtgaccggcctgtccacgctggtc
gtgatcgatccgaagcgccgcggctccgccaaggtggtgcgcccgcaggtgaagctcgtc
gatgcgaacggcgccgaggtgaagatccccggtaccgaccactcggtgacgatcggcttc
caggtcggcgcgctgatccaggtacgcgacggccaggacgtgggccccggcgaggtgctg
gcacgtattccggtcgaaggccagaagacccgcgacattaccgggggtctgccgcgcgtg
gccgagctgttcgaagcccgttcgcccaaggacaagggcatgctggccgagatcaccggc
acggtgtccttcggcaaggaaacgaagggcaaggtgcgcctgcagatcaccgatccggac
ggcaaggtctgggacgaactggtgcccaaggaaaagaacgtgctggtccacgaaggccag
gtggtgaacaagggcgagttgatcgtcgatggcccggccgatccgcaggacatcctgcgc
ctgctgggcatcgaggagctgtcgcgctacatcgtcgatgaagtgcaggacgtctatcgc
ttgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtcgtggtcgagaacccgggcgagtccggctacatcgccggcgagcaggtcgagcgt
tcggagatcctcaacaccaacgaacagctgcagtccgaggacaagatccccgcgacctac
agcaacgtgctgctgggtatcacgaaggcttcgctgtccaccgactcgttcatctcggcc
gcctccttccaggaaacgacccgcgtgctcaccgaggctgccatcatgggcaagcgcgac
gagctgcgcggcctgaaggagaacgtgatcgtgggccgcctgatcccggcgggcacgggc
ctggcctaccaccaggcacgcaaggccaaggaagccatggacgacgccgagcgccgcgcc
atcgccgaagccgaggcggccgagatggccaccacgggtcccgatgaagctccggaggtc
gaaggctccggcgtggaaagcggctcggccgagtaa
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