Amycolatopsis albispora: A4R43_19060
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Entry
A4R43_19060 CDS
T05547
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aab
Amycolatopsis albispora
Brite
KEGG Orthology (KO) [BR:
aab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aab03019
]
A4R43_19060
Enzymes [BR:
aab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
A4R43_19060
Messenger RNA biogenesis [BR:
aab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
A4R43_19060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
WHD_HA2
NACHT
T2SSE
nSTAND3
nSTAND_NTPase5
AAA_30
SLFN-g3_helicase
AAA_25
ABC_tran
AAA_23
PhoH
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AXB44359
UniProt:
A0A344L8I5
LinkDB
All DBs
Position
complement(4133599..4137447)
Genome browser
AA seq
1282 aa
AA seq
DB search
MPRDRSRLRRRLEGARKARDVEAVAARIEADIAAAEQRVANRRAAVPKVTYPAELPVSQR
KDDIAAAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVFGQIGHTQPRRLAARTVAERI
AEELSSQVGAAVGYKVRFTDQGDENTLVKLMTDGILLAEIQGDRMLRQYDTLIIDEAHER
SLNIDFILGYLKQLLPRRPDLKVIITSATIDPERFSRHFDNAPIVEVSGRTYPVEVRYRP
IIDPEDPDADPDRDQISAISDAVAELSAEGPGDILVFLSGEREIRDTADALSKQDLRNTE
ILPLYARLSSAEQHRVFQRHTGRRVVLATNVAETSLTVPGIKYVVDPGTARISRYSHRTK
VQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFLARPEFTDPEILRTNLASVILQ
MTSLGLGDIAAFPFVEPPDRRQITDGVNLLQELGAFDASAKEVKDRLTDVGRKLAQLPVD
PRLGRMVLEAAKTGALREVLVIASALSIQDPRERPADKQQAAGEKHARFADKTSDFLAYL
NLWQYLHEQQRELSGNQFRKLCKAEFLNYLRVREWQDVHSQLRRLTKQLGVTPNTTDADP
QQVHTALIAGLLSHIGLKDPAKGDYLGARGARFSIFPGSALFKKQPRLVMSAELVETSRL
WGRVNARIEPDWVEPLAAHVVKRTYSEPHWERKQGAVMALEKVTLYGVPLVADRRVNYGR
IDPELSRELFIRNALVEGDWQTNHRFFHENRALLAEVEDLEHRARRRDILVDDETLFEFY
DQRIGAEVVSARHFDTWWKKTRREQPDLLSFEKSMLINATAGDVSAADYPDTWTTPEGIS
LKLTYQFEPGADADGVTVHVPLPVLNQVTADGFDWQVPGLREELVTALIKSLPKPIRRNF
VPAPDTAKQVLARISPADGPLLDVLAGELEALRGVEIPADAWQPDAVPEHLKVTFRVIDG
KKKLAEGKDLEALRQRLTGELRASISKAADHVERAGLSSPAFGEVPKVFERKQRGLEVKA
YPALVDEGETVAVRMLETPAEQEHSMWLGTRKLLRLNVPSPMKFINRNLGNQAKLVLNRN
PHGSVAALLEDCVNCAIDELMAAGGGPTWDEAGFAVLLQRVRAGLNATVVRVLHDVEQVL
RAAIDVETRLADVRGPALAESLADIREQLGELIFPGFVTATGSARLPDLVRYLRAIERRL
DKLPSDPARDVERLREVHWLRDEYKSLVDAQPRGTSSGALRDVRWMIEELRVSFFAQTLR
TAYPVSVKRVLRAMDDAVVPAG
NT seq
3849 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgcgaccggtcccggctgcgacggcggctggaaggcgcccgcaaggcgcgtgac
gtcgaggcggtcgccgcgcggatcgaggccgacatcgccgccgccgagcagcgcgtggcg
aaccggcgggccgcggtcccgaaggtcacctatccggcggaactgccggtcagccagcgc
aaggacgacatcgccgccgccatccgcgatcaccaggtggtgatcgtggccggtgagacc
ggctcggggaagaccacgcagctgccgaagatctgcctcgaactcgggcgcggggtgttc
ggccagatcgggcacacccagccgcggcgcctggccgcgcgcacggtggccgagcgcatc
gccgaggagctgtcgtcgcaggtcggcgcggcggtcggctacaaggtgcggttcaccgac
cagggtgacgagaacaccctggtgaagctgatgaccgacggcatcctgctggccgagatc
cagggcgaccggatgctccggcagtacgacacgctgatcatcgacgaggcgcacgagcgc
agcctcaacatcgacttcatcctcggttacctcaagcagctgctgccgcgccgccccgac
ctcaaggtgatcatcacctcggccaccatcgatcccgagcggttctcacggcacttcgac
aacgcgccgatcgtggaggtctccggccgcacgtatccggtcgaggtgcggtaccggccg
atcatcgacccggaggatcccgacgcggaccccgatcgcgaccagatctccgcgatctcg
gacgcggtggccgagctgtccgccgaaggtcccggcgacatcctggtcttcctctccggt
gaacgggaaatccgcgacaccgccgacgcgctgtccaaacaggacctccggaacaccgag
atcctgccgctgtacgcgcggctgtcctcggccgagcagcaccgggtgttccagcggcac
accgggcgccgggtggtgctggccaccaacgtcgccgagacctcgctgaccgtgccgggc
atcaagtacgtggtggacccgggcaccgcgcgcatctcccgctacagccaccgcaccaag
gtgcagcggctgccgatcgagccggtttcgcaggcgtcggcgaaccagcgcaagggccgc
tgcgggcggacctcggacggcatctgcatccggctgtactccgaggacgacttcctggcc
aggccggagttcaccgatccggagatcctgcgcaccaatctcgcgtcggtcatcctgcag
atgacctcgctcgggctcggggacatcgccgccttcccgttcgtcgaaccgccggaccgc
cgtcagatcaccgacggcgtgaacctgctccaggaactcggcgccttcgacgcctccgcc
aaggaggtcaaggacaggctcaccgacgtcggccgcaagctcgcgcagctgccggtggac
ccgcggctgggccgcatggtgctggaggcggcgaaaaccggggcgctgcgcgaggtgctg
gtgatcgcctccgcactgtccattcaggacccgcgtgagcggccggcggacaagcagcag
gcggcgggggagaagcacgcccggttcgccgacaagacctcggacttcctggcgtacctc
aacctctggcagtacctgcacgagcagcagcgcgagctgtccggcaaccagttccgcaag
ctgtgcaaggcggagttcctgaactacctgcgggtgcgggagtggcaggacgtgcacagc
cagctgcggcggctgaccaagcagctgggcgtcacgccgaacaccaccgacgccgatccg
cagcaggtgcacaccgcgctgatcgccgggctgctctcgcacatcgggctgaaggacccg
gccaagggcgactacctcggcgcccgcggggcgcggttctcgatcttccccggctcggcg
ttgttcaagaagcagccgcgcctggtgatgtccgccgaactggtggagacctcccggctg
tggggccgggtcaacgcgcgcatcgagccggactgggtggagccgctggccgcgcacgtg
gtcaagcgcacctactccgagccgcactgggagcgcaagcagggcgcggtgatggcgctg
gagaaggtcaccttgtacggcgtgccgctggtggccgaccgccgggtgaactacggccgc
atcgatcccgagctgtcgcgcgagctgttcatccgcaacgcgctagtcgagggcgactgg
cagaccaaccaccggttcttccacgagaaccgcgcgctgctggccgaggtcgaggacctg
gagcaccgggcccgccgccgcgacatcctggttgacgacgagaccctgttcgagttctac
gaccagcgcatcggcgccgaggtggtctccgcccggcacttcgacacctggtggaagaag
acccggcgcgagcagcccgacctgctcagcttcgagaagtcgatgctgatcaacgccacc
gccggggacgtcagcgcggccgactaccccgacacctggaccacgcccgagggcatctcg
ctcaagctcacctaccagttcgaaccgggtgcggacgccgacggcgtgaccgtgcacgtg
ccgctgccggtgctgaaccaggtcaccgccgacggcttcgactggcaggtgcccggcctg
cgggaggaactggtcaccgcgctgatcaagtcgctgccgaagccgatccgccgcaacttc
gtgcccgcgccggacaccgcgaagcaggtgctcgcgcggatttccccggccgacggcccg
ctgctggacgtgctggccggtgagctggaggcgttgcgcggggtggagatcccggcggac
gcgtggcagccggacgccgtgcccgagcacctgaaggtcaccttccgggtgatcgacggc
aagaagaagctcgccgagggcaaggacctcgaagcgctgcggcagcggctcaccggtgag
ctgcgggcgtcgatttcgaaggccgccgaccacgtcgagcgcgccgggctcagctcgccc
gcgttcggcgaggtgccgaaggtgttcgagcgcaagcagcgcgggctcgaggtcaaggcg
tacccggcgctggtggacgagggcgagacggtcgccgtccgcatgctggaaaccccggcc
gagcaggaacactcgatgtggctgggcacgcggaaactgctgcggctgaacgtgccgtcg
ccgatgaagttcatcaaccggaacctgggcaaccaggcgaagctggtgctcaaccgcaat
ccgcacggcagcgtcgcggcgctgctggaggactgcgtcaactgcgcgatcgacgagctg
atggccgccggcggcgggccgacctgggacgaggccgggttcgccgtgctgctgcagcgc
gtgcgggccgggttgaacgcgaccgtggtccgggtgctgcacgacgtcgagcaggtgctg
cgcgcggcgatcgacgtggagacgcggctggccgacgtgcgcgggcccgcgctggcggag
tcgctggccgacatccgcgagcagctcggcgagctgatcttccccggctttgtcaccgcc
accggctcggcgcggctgccggacctggtgcggtacctgcgggcgatcgagcggcggctg
gacaagctgcccagcgacccggcgcgcgacgtggagcggctgcgcgaagtccactggctg
agagacgagtacaaatcccttgtggacgcgcagccgcgcggtacatcctcaggcgcactg
cgggacgtgcgctggatgatcgaggagctgcgggtcagcttcttcgcccagacgctgcgc
accgcttatccggtatcggtgaagcgggtgctgcgcgccatggacgacgcggtggttccc
gccggttag
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