Amycolatopsis albispora: A4R43_23970
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Entry
A4R43_23970 CDS
T05547
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aab
Amycolatopsis albispora
Pathway
aab03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A4R43_23970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aab03400
]
A4R43_23970
Enzymes [BR:
aab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A4R43_23970
DNA repair and recombination proteins [BR:
aab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A4R43_23970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AXB48749
UniProt:
A0A344LL25
LinkDB
All DBs
Position
complement(5145786..5149343)
Genome browser
AA seq
1185 aa
AA seq
DB search
MSGLVGSALSGATLRPVLDRAGAPLLELQGPTAARQLVAAALAAPDGADRPVLAVTATGR
EADELTSALSALLGPDAVADFPSWETLPHERLSPRADTVGRRLDVLHRLNGPDRGGLRVV
VATVRSLIQPMAPGLGTLAPVELRVGAEQEFEGVLSRLVELAYTRVDMVEKRGEFAVRGG
ILDVFPPTAEHPHRVEFWGDEVSEIRAFAVSDQRSLPGEIDAVVAPPCRELLLTPEVKAR
AAELAQTHAADAQLAEMLTKLADGIPCEGMEALIPVLCEGELELLTDAMPAGAHVLLADP
EKIRARAHDLVRTGQEFLEASWTTAAGGGSAPIDLGASAYRDLSEVAAHAQDTKRAWWTL
SQLTTEGEDVVHVAVEAAPAYRGEFERAITDLRAHTASGGAAVIVVAGHGTASRVAEQLG
AAEVPARQVDRLDKAPETGVVTITCGGLVDGFALPDQALVVLSEADLTGRGAGAGTSTRD
LNTKMPSRRRNAVDPIALKAGDYVVHDQHGIGRFVEMVQRTVAGATREYLLLEYASSKRG
QPGDRLFVPTDQLDEVSRYVGGELPTLNKLGGSDWKNTKAKARKAVKEIAAELVQLYAAR
QAAPGHAFGPDTPWQSELEDAFPFTETGDQLAAIDEVKTDMERGVPMDRVICGDVGYGKT
EIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLSTFTERMQSFPVTIKGLSRFTSKTESDLV
LEGLAAGEVDIVIGTHRLLQTGIRYQDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMS
ATPIPRTLEMSLAGIREMSTILTPPEDRHPILTYVGAYDDKQVGAAIRRELLRDGQVFYV
HNRVSSIEKAAKRIRELVPDARVVTAHGQMNEDKLEKIIEGFWAREFDVLVCTTIVETGL
DISNANTLIVERGDLLGLAQLHQLRGRVGRGRERGYAYFLYPAEAPLTETAHDRLATIAQ
NTELGAGMAVAMKDLEIRGAGNILGAEQSGHIAGVGFDLYVRLVGEAVDVFRRSAGAEPL
EDEAPAEVRVDLPVDAHIPHDYVPGERLRLEAYRKIAAATDGAALDAVREELVDRYGQPP
ASVGRLLAVARFRQACRAAGVTEVSTQGNSIRFAPLPLADSQLVRLKRLYPKAVYKAVTH
TVSVPKPTEGPAGGRMGAPQLRDEPLLDWCTKLLESLSKAPAAVG
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
ctgtccggtctcgtgggctcagccctgtccggcgccacgctgcgccccgtgctcgaccgc
gcgggtgccccgctgctcgaactccaggggccgaccgccgcccggcagctggtcgcggcc
gcgctcgccgcgccggacggcgccgatcgcccggtgctcgcggtcaccgccaccggccgc
gaggctgacgagctgacgtcggcgttgtccgcgctgctcggcccggacgcggtcgccgac
ttcccgtcgtgggaaacgctgccgcacgagcgcctctcgccgcgcgcggacaccgtcggc
cgccgcctcgacgtgctgcaccggctcaacggcccggatcgcggcggcctgcgggtggtg
gtggccaccgtccgcagcctgatccagccgatggcgccgggcctgggcacgctggcgccg
gtcgagctgcgggtcggcgccgagcaggagttcgagggcgtgctctcgcgcctggtcgag
ctggcctacacgcgcgtcgacatggtggagaagcgcggtgagttcgccgtgcgcggcggc
atcctggacgtcttcccgccgaccgccgagcacccgcaccgcgtcgagttctggggcgac
gaggtcagcgagatccgcgcgttcgcggtgtcggaccagcggtcgctgccgggcgagatc
gacgccgtggtcgcgccgccgtgccgcgagctgctgctcacgccggaggtcaaggcccgc
gccgccgaactcgcgcagacccacgccgcggacgcccagctggccgagatgctgaccaag
ctcgcggacggaatcccttgcgagggcatggaagcgctcatcccggtgctgtgcgagggc
gagctggagctgctcaccgacgcgatgccggcgggtgcgcacgtgctgctcgccgacccg
gagaagatccgcgcgcgggcacacgacctggtccgcaccgggcaggagttccttgaagcc
tcgtggaccacggccgcgggcgggggttcggcgccgatcgacctcggcgcgtcggcctac
cgcgacctgagcgaggtggccgcgcacgcgcaggacaccaagcgcgcgtggtggacgctg
tcgcagctgaccaccgagggcgaggacgtggtgcacgtcgcggtcgaggccgcgcccgcc
taccgcggcgagttcgagcgcgcgatcaccgacctgcgtgcgcacaccgcgtccggtggc
gcggcggtgatcgtggtcgccgggcacggcacggccagccgggtcgccgagcagctcggc
gcggccgaagtgcccgcgcgccaggtggaccggctggacaaggcaccggaaaccggcgtc
gtgacgatcacctgcggtggcctcgtcgacggtttcgcgctgccggaccaggcgctggtg
gtgctcagcgaagcggacctcaccggccgcggcgcgggcgccggaacgtccacaagggac
ctgaacaccaagatgccgtcgcggcgccggaacgcggtcgatccgatcgcgctcaaggcg
ggcgactacgtggtgcacgaccagcacggcatcggccggttcgtggagatggtgcagcgc
acggtcgccggggccacccgcgagtacctgctgctggagtacgcctcgtccaagcgcggc
cagccgggcgaccggctgttcgtgccgaccgaccagctcgacgaggtctcccgctacgtc
ggtggcgagctgcccacgctgaacaagcttggcggctccgactggaagaacaccaaggcc
aaggcgcgcaaggcggtcaaggagatcgccgccgagctggtgcagctctacgccgcccgc
caggccgcgcccggccacgccttcggcccggacacgccgtggcagagcgagctggaggac
gccttcccgttcaccgagaccggcgaccagctcgccgccatcgacgaggtcaagaccgac
atggaacgcggggtcccgatggaccgcgtgatctgcggtgatgtcggttacggcaaaacg
gagatcgccgtgcgcgcggcgttcaaggcggtgcaggacggcaagcaggtggccgtgctg
gtgccgaccacgctgctcgcgcaacagcacctgagcaccttcaccgagcgcatgcagtcg
ttcccggtgaccatcaagggcctgtcgcggttcacctcgaagaccgagtcggacctggtg
ctcgaggggctggccgccggtgaggtggacatcgtcatcggcacgcaccgcctgctgcag
accgggatccgctaccaggacctcggcctggtgatcgtggacgaggagcagcggttcggc
gtcgagcacaaggagcacatcaaggcgctgcgcacgcacgtggacgtgctgaccatgtcg
gcgacgccgatcccgcgcacgctggagatgtcgctggcgggcattcgcgagatgtccacc
attctcaccccgcccgaggacaggcacccgatcctgacctacgtcggcgcctacgacgac
aagcaggtcggcgccgccatccgccgcgaactgctgcgcgacggccaggttttctacgtg
cacaaccgggtttcgtcgatcgagaaggcggcgaagcgcatccgcgagctggtgccggac
gcacgggtggtcaccgcgcacggccagatgaacgaggacaagctcgagaagatcatcgag
gggttctgggcgcgcgagttcgacgtgctggtgtgcacgacgatcgtggagaccgggctc
gacatctccaacgcgaacacgctcatcgtcgagcgcggtgacctgctcggcctggcccag
ctgcaccagctgcgcgggcgcgtcggccgcggccgcgagcgcgggtacgcgtacttcctg
tacccggcggaggcgccgctcaccgagaccgcgcacgaccggctggccaccatcgcgcag
aacaccgagctgggcgcgggcatggcggtcgcgatgaaggacctggagatccgcggcgcg
ggcaacatcctgggcgcggagcagtccgggcacatcgccggcgtcggcttcgacctgtac
gtgcggctggtcggcgaggcggtggacgtgttccgccgcagcgcgggcgccgagccgctg
gaggacgaggcacccgccgaggtcagggtggacctgccggtggacgcgcacatcccgcac
gactacgtgcccggggagaggctgcgcctggaggcgtaccgcaagatcgccgcggccacc
gacggcgccgcgctggacgcggtgcgcgaggaactggtcgaccggtacggccagccgccg
gcttcggtgggcaggctgctggcggtggcgcggttccggcaggcgtgccgggcggctggc
gtgaccgaggtgtccacccagggcaacagcatccggttcgcgccgctgccgctggcggat
tcgcagctggtgcgcctgaagcgcttgtaccccaaggccgtctacaaggcggtgacgcac
acggtgtcggtgccgaagccgaccgagggcccggccggtggccggatgggcgcgccgcag
ctgcgtgacgagccgctgctcgactggtgcaccaagctgctggagtcgctgtcgaaggcg
ccggccgcggtcggctga
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