Amycolatopsis acidiphila: LWP59_03040
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Entry
LWP59_03040 CDS
T07896
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aacd
Amycolatopsis acidiphila
Pathway
aacd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aacd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LWP59_03040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aacd03021
]
LWP59_03040
03400 DNA repair and recombination proteins [BR:
aacd03400
]
LWP59_03040
Enzymes [BR:
aacd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LWP59_03040
Transcription machinery [BR:
aacd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LWP59_03040
DNA repair and recombination proteins [BR:
aacd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LWP59_03040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UIJ60675
LinkDB
All DBs
Position
618402..622313
Genome browser
AA seq
1303 aa
AA seq
DB search
MLDVNYFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVNTELRHNDLPTLENEIGVERKNIETKRDADIEARAQKLEAD
LAQLEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLEEIWTTFSKLEPRQLIADEML
YRELFDRYGEYFTGGMGAEAIQKLATEFDVAAEADNLRDTIRNGKGQKKLRALKRLKVVA
AFQATGNDPRGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKDMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PAVWDVLEEVITGHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSANNILSPASGRPLAMPRLDMVTGLFHLTRLDENATGAGQ
AYSSPAEAIMAYDRKALSLHAPIKIRITDRQPSKADEARLAEKGWEPGQMWLAETSLGRV
LFNELLPPDYPFVNEPMPKKRQAAIVNDLAERYSMTQVAQTLDRLKDAGFYWATRSGVTV
AISDVVVPKEKKEILDQYEAKADQVEKRYQRGQLSHTERNNELVKVWSQATDDVAKVMED
AFPDDNPISVIVKSGAAGNMTQVRSLAGMRGLVSNPKGEYIPRPIKANFREGLSVAEYFI
ATHGARKGLADTALRTADSGYLTRRLVDVSQDVIVRETDCGTTRGINMPIGEDLGDGRIV
RAQHVETSAYARTLATDATDAEGNVVLNGGDDLGDPAIEKLITSGITRVKVRSVLTCEST
VGVCATCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPR
VTELFEARVPKGKAPIADVDGRVRIEESERFWKITLIPDDGSEEIVFDKLSKRQRLANTP
TGPLADGDHVSVGQPLLEGTPDPHEVLRVMGPREAQMHLVDEVQKVYRAQGVSIHDKHIE
VIVRQMLRRVTIIDSGSTDFLPGELPERTKFEATNRAAVAEGGEPASGRPVLMGITKASL
TTDSWLSAASFQETTRVLTDAAINGRSDKLVGLKENVIIGKLIPAGTGINRYRNIQVQPT
EEARVAAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDFR
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
gtgctggacgtcaactacttcgatgagctcaggatcggcctggccaccgctgacgacatc
cgccagtggtccttcggcgaggtgaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggccccacccgggactgggagtgc
tactgcggcaagtacaagcgggtccgcttcaagggcatcatctgcgagcgctgtggtgtc
gaggtgacccgtgccaaggtgcggcgtgagcggatgggccacatcgagctggccgccccg
gtcacccacatctggtacttcaagggcgtgccgtcgcggctgggctacctgctggacctg
gccccgaaggatctcgagaagatcatctacttcgcggcctacgtgatcaccgcggtgaac
accgagctgcggcacaacgacctgccgacgctggagaacgagatcggcgtcgagcgcaag
aacatcgagaccaagcgcgacgccgacatcgaggcgcgggcgcagaagctcgaggccgac
ctggcgcagctcgaggccgagggtgccaagtccgacgtgcgccgcaaggtcaaggagggc
ggcgagcgcgagatgcgccagctccgcgaccgggcccagcgcgagctggaccggctcgag
gagatctggacgacgttcagcaagctcgagccgcggcagctgatcgcggacgagatgctc
taccgcgagctgttcgaccgctacggcgagtacttcaccggcggcatgggcgcggaggcc
atccagaagctggccaccgagttcgacgtcgccgcggaggccgacaacctgcgcgacacc
atccgcaacggcaaggggcagaagaagctccgcgctctcaagcggctgaaggtcgtcgcg
gcgttccaggccaccggcaacgacccgcgtggcatggtgctcgacgccgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccggttcgcgacctcggacctc
aacgacctgtaccgccgggtgatcaaccggaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgtggccgtccggtcaccggccctggcaaccggccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaaggacatggcgctggagctgttcaagccgttcgtgatgaagcggctg
gtcgacctgaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgggcccgc
ccggccgtgtgggacgtgctggaagaggtcatcaccgggcacccggtgctgctcaaccgt
gcgccgaccctgcaccgcctcggcatccaggccttcgagccgcagctggtggaaggcaag
gccatccagctgcacccgctggtctgcgaggcgttcaacgcggacttcgacggtgaccag
atggcggtgcacctgccgctgtcggccgaggcgcaggccgaggcccggatcctgatgctc
tcggcgaacaacatcctgtcgccggcctcgggccgtccgctggccatgccccggctggac
atggtcacgggtctgttccacctgacccgcctggacgagaacgcgaccggtgccgggcag
gcgtactcctcgcccgccgaggcgatcatggcctacgaccgcaaggcgctgagcctgcac
gccccgatcaagatccggatcaccgaccggcagccgagcaaggccgacgaggcccgcctg
gccgagaagggctgggagccgggtcagatgtggctcgccgagaccagcctcggccgggtg
ctgttcaacgagctgctgccgccggactacccgttcgtgaacgagccgatgccgaagaag
cggcaggccgcgatcgtgaacgacctggcggagcggtactcgatgacgcaggtcgcgcag
accctggaccggctcaaggacgccggcttctactgggcgacccgctctggcgtcaccgtc
gccatctccgacgtggtcgtgcccaaggagaagaaggagatcctcgaccagtacgaggcc
aaggccgaccaggtcgagaagcgctaccagcgcggtcagctctcgcacaccgagcgcaac
aacgagctggtcaaggtgtggagccaggcgaccgacgacgtcgccaaggtcatggaggac
gccttccccgacgacaacccgatctccgtgatcgtgaagtcgggggcggcgggcaacatg
acccaggtccgttcgctggccggtatgcgtggtctggtgtcgaacccgaagggtgagtac
atcccgcgcccgatcaaggcgaacttccgtgagggcctgtcggtggccgagtacttcatc
gccacccacggtgcccggaagggcctggccgacaccgcgctgcggaccgccgactcgggt
tacctgacccggcgtctggtggacgtgtcgcaggacgtcatcgtccgcgagaccgactgt
ggcaccacccgcggcatcaacatgccgatcggcgaggacctcggcgacggccggatcgtg
cgtgcgcagcacgtcgagaccagcgcctacgcccggaccctggccaccgacgccacggac
gccgagggcaacgtggtgctcaacggtggcgacgacctcggcgaccccgcgatcgagaag
ctgatcaccagcgggatcaccagggtcaaggtccgcagcgtgctgacctgcgagtccacc
gtcggggtgtgcgccacctgctacggccgctcgatggcgaccggtcagctggtggacgtc
ggcgaggccgtcggcatcgtcgccgcccagtcgatcggcgagcctggtacccagctgacg
atgcgtaccttccaccagggtggtgtcgccggtgacgacatcaccacgggtctgccccgt
gtcaccgagctgttcgaggcccgggtgccgaagggcaaggcgccgatcgccgacgtcgat
ggccgcgtgcgcatcgaggagagcgagcggttctggaagatcacgctgatcccggacgac
ggcagcgaggagatcgtcttcgacaagctgtcgaagcgtcagcgcctcgccaacaccccg
accgggccgctggcggacggcgaccacgtgtcggtcggccagccgctgctcgagggcacg
ccggacccgcacgaggtgctgcgtgtgatgggcccgcgcgaggcgcagatgcacctggtg
gacgaggtccagaaggtgtaccgggcgcagggtgtgtcgatccacgacaagcacatcgag
gtgatcgtccggcagatgctgcgccgggtcacgatcatcgactccggttcgaccgacttc
ctgcctggtgagctccccgagcgcaccaagttcgaggcgacgaaccgggccgcggtcgcc
gagggcggcgagcccgcctcgggtcgcccggtgctgatgggtatcacgaaggcctcgctg
accacggactcgtggctgtccgcggcgtcgttccaggagaccacgcgtgtcctgaccgac
gcggcgatcaacggccgcagcgacaagctcgtgggcctcaaggagaacgtgatcatcggc
aagctgatcccggccggcacgggcatcaaccggtaccgcaacatccaggtgcagccgacc
gaggaggccagggtggccgcgtacgccatcccgtcctacgacgacggctactacaccccg
gacgtgttcggcaccggcaccggtgcggcggtcccgctggacgactacgacttcgggcgt
gacttccgctga
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integrated database retrieval system
