Amycolatopsis acidiphila: LWP59_09165
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Entry
LWP59_09165 CDS
T07896
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aacd
Amycolatopsis acidiphila
Pathway
aacd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aacd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LWP59_09165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aacd03019
]
LWP59_09165
03009 Ribosome biogenesis [BR:
aacd03009
]
LWP59_09165
Enzymes [BR:
aacd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LWP59_09165
Messenger RNA biogenesis [BR:
aacd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LWP59_09165
Ribosome biogenesis [BR:
aacd03009
]
Prokaryotic type
rRNA processing factors
LWP59_09165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
RD3
Motif
Other DBs
NCBI-ProteinID:
UIJ61768
LinkDB
All DBs
Position
1880462..1883764
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AA seq
1100 aa
AA seq
DB search
MTNAETPAENTGGDTAAPTGPLGELPARVRVHALAKLLGSNSRDVLAKLTELGETARSAQ
SSVPKDVAIRVAEALAGPAEEPTAAEVAAVAQAEPEAPESDTTEITAAPDVEEAAPERQP
AGRRSMAHVPVFAAPSPVFLPPEPPAARPEPTQQQQDEPVAQEEPAEAPERDRDDDGDDA
NGRRRRRRGRRGRGRGKGGDEGSSNEDESTDQPEHADEDKPAPAQDERKPDADAESDDED
SDDTDAGSRRRRRRRRRKASEDDNAEPTTGDDPPNTVVHVREAKGEDKSNGREAKADKAD
KGDKGDGVRSVRGSTRLEAKRQRRRDGREAGRRRAPILSEAEFLARREAVERTMVVAERG
DHTQIGVLEDGVLVEHFVTSSGSGSIVGNVYLGRVQNVLPSMEAAFVDIGRGRNAVLYAG
EVDWDAAGLEGKSRKIEQALSSGDNVLVQVTKDPVGHKGARLTTQISLPGRFLVYVPAGG
ATGISRKLPENERRRLKDILKRIVPEDAGVIIRTASEGISEEELERDVRRLKAQWEIIKE
KAGAASSGKKSSAPTMLYEEPDLLVKVVRDLFTEDFAKLEVQGDTAWETINAYVGHVAPD
LAPRLKRYVGTGDVLSEYRIDEQITKALDRKVWLPSGGYLVIDRTEAMTVIDVNTGKFTG
SGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRD
RTRHQVAEVTSLGLVQMTRKKVGTGLLEAFSTPCEHCKGRGVIVSTELSRLSNANGSNGN
GGGGGGHQHGGGGSRRSRGRGKAEEPQEQRGEAGRTPERRESVVTAVQAMANAAKLASTG
KPEGEETAEDGVSAALNGRHTPEEQAGPEAAQAETDELASAGSTPAETPAEAAQAPFGTG
TADDAEAAQASSGKGIAGDVESTQAEAAPEAGSGPAAGAAPEAPAGAGPEAAVEAGPDVP
AAEAAPEAPATAPTPVDAAPEAPADAAEAAPDTPSATSDAAPAAWDATSPAAAEASNAIS
TSSDAAPAASEAASAASPSAVEAPSAEPERTSTPEPAGDAQEQAEPEVEVPTPAVRTARR
RPRRAASRPAGPPVHASDQS
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgacgaacgcggaaacacccgccgagaacaccggcggggacaccgccgcacctaccggc
ccgctgggcgaactgcccgcccgggtgcgggttcacgccctggcgaagctgctcgggtcg
aacagcagggacgtgctggcgaaactgaccgaactgggggagaccgcccgcagcgcccag
tcgagcgtgcccaaggacgtggcgatcagggtggccgaggccctcgctggcccggccgag
gagcccacggccgctgaggtcgcggccgtggcacaggccgagccggaggcgccggagtcc
gacacgaccgagatcaccgcggcccccgacgtggaggaagccgcaccggagcgccagccc
gccggtaggcggtcgatggcccacgttccggtgttcgcggccccgtcgccggtgttcctg
ccgcccgagccgcctgccgcccggcccgagccgacgcagcagcagcaggacgagcccgtc
gcccaggaggagcccgccgaggcgcccgagcgcgacagggacgacgacggcgacgacgcg
aatggccggcgccgccggcgtcgtggccgtcgtggccgtggccggggcaagggcggtgac
gagggctcgtcgaacgaggacgagagcaccgaccagccggaacatgccgacgaggacaag
ccggccccggcgcaggacgagcgcaagcccgatgccgacgccgagagcgacgacgaggac
tcggacgacaccgatgccggcagccgccgtcgtcggcgtcgccgccgccgcaaggcctcg
gaggacgacaacgccgagcccacgaccggcgacgacccgccgaacaccgtcgtgcacgtc
cgcgaggccaagggcgaggacaagagcaacggcagggaagccaaggccgacaaggctgac
aagggcgacaagggcgacggggtccgcagcgtgcgcggctccacccggctcgaagccaag
cgccagcgccgccgcgacggccgtgaagcgggccgccgccgcgcgccgatcctctccgag
gccgagttcctggcccggcgtgaggcggtcgagcgcaccatggtcgtggccgagcgcggc
gaccacacgcagatcggcgtgctcgaggacggcgtgctggtcgagcacttcgtgacctcg
tcgggcagcggctcgatcgtcggcaacgtctacctgggccgggtgcagaacgtgctgccc
tcgatggaggcggcgttcgtcgacatcgggcgtggccgcaacgcggtgctctacgccggt
gaggtcgactgggacgccgccggcctggaaggcaagtcccgcaagatcgagcaggcgctc
tccagcggtgacaacgtgctggtccaggtcacgaaggacccggtcggccacaagggcgcg
cggctcaccacgcagatctcgctgccgggacggttcctggtgtacgtgcccgcgggcggg
gccaccggcatctcccggaagctgccggagaacgagcgtcgccggctcaaggacatcctc
aagcgcatcgtccccgaggacgcgggcgtcatcatccgcaccgcgtcggagggcatcagc
gaggaggagctcgagcgcgacgtccgccgcctgaaggcccagtgggagatcatcaaggag
aaggcgggcgcggcttcgagcggcaagaagtcgtccgcgccgacgatgctctacgaggag
ccggacctgctggtgaaggtcgtccgcgacctgttcaccgaggacttcgcgaagctcgag
gtccagggcgacacggcgtgggagacgatcaacgcctacgtcgggcacgtggcgccggac
ctcgcccctcggctcaagcgctacgtcggcaccggtgacgtgctctccgagtaccggatc
gacgagcagatcacgaaggcgctcgaccgcaaggtgtggctgccctcgggcggctacctg
gtcatcgaccgcaccgaggcgatgaccgtcatcgacgtcaacaccggcaagttcaccggc
tccgggggcaacctcgaggagacggtgacccggaacaacctggagtccgccgaggagatc
gtgcgccagctgcggctgcgcgacatcggcggcatcatcgtgatcgacttcatcgacatg
gtgctggagtccaaccgcgagctggtgctgcggcggctgaccgaatgcctcggccgggac
cgcacccgccaccaggtggccgaggtgacgtcgctgggcctggtgcagatgacccgcaag
aaggtcggcaccggactgctggaggcgttctcgacgccgtgtgagcactgcaagggccgc
ggcgtgatcgtctcgaccgagctgtcgcgcctgtcgaacgcgaacggttccaacggcaac
ggcggtggtggcggtgggcaccagcacggcggcggtggctcccggcgctcgcgaggccgg
ggcaaggccgaggagccgcaggagcagcgcggtgaggccgggcgcacgcccgagcggcgg
gagtcggtggtcacggccgtccaggccatggcgaacgccgcgaagctggcctcgacgggc
aagcccgagggcgaggagaccgcggaggatggggtgtcggccgcgctgaacggccggcac
acgcccgaggagcaggcaggcccggaggcggcccaggccgagacggacgagctggcctcg
gccgggtcgacgcccgccgagacgcctgccgaggccgcccaggcgccgttcggcacgggc
accgcggatgacgcggaggccgcccaggcgtcgtccggcaagggcatcgccggcgacgtg
gagtccacccaggccgaggccgcacccgaggccgggtctgggcccgctgccggagccgca
cccgaggcccctgccggggccggaccagaggccgctgtcgaggcgggacctgacgtcccg
gctgccgaggccgcgcctgaggctccggccacggcgcctaccccggtcgacgccgctccc
gaggctccggccgacgcggccgaggccgcgcctgacaccccgtccgcgacctcggacgcc
gcgcctgcggcctgggatgccacttccccggcggcagccgaggcgtcgaatgccatctcc
acgagctcggacgccgcgcctgcggcctcggaagctgcgtctgcggcttccccgtccgcg
gtcgaggcccccagcgccgagcccgagcgcacgtccacgccagagcccgccggggacgcg
caggagcaggcggagcccgaggtcgaggtgccgactccggctgtgcgcactgcccgtcgg
cgtccgcgccgtgcggcgtcgcgcccggcaggccccccggtgcacgcctcggaccagagc
tga
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