Amycolatopsis acidiphila: LWP59_24780
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Entry
LWP59_24780 CDS
T07896
Name
(GenBank) RecQ family zinc-binding domain-containing protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aacd
Amycolatopsis acidiphila
Pathway
aacd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aacd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LWP59_24780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aacd03019
]
LWP59_24780
03400 DNA repair and recombination proteins [BR:
aacd03400
]
LWP59_24780
Enzymes [BR:
aacd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LWP59_24780
Messenger RNA biogenesis [BR:
aacd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LWP59_24780
DNA repair and recombination proteins [BR:
aacd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LWP59_24780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
RecQ_Zn_bind
MarR_2
DEAD
HTH_IclR
Dimerisation
Motif
Other DBs
NCBI-ProteinID:
UIJ57361
LinkDB
All DBs
Position
complement(5067457..5068587)
Genome browser
AA seq
376 aa
AA seq
DB search
MFVVDEAHLVSEWGEEFRPEYLRLGDAIAELGRPAVLALTATASPPVQADITRRLKMRSP
DVVVADFDRPNIALAMRQTQPGEREAQAVDDRCVEVLIEQETPALIYALTHARCESLADR
LRLDAFRAAPYHGGMTAGARARVQDEFSAGQLDVVVATSAFGMGIDKPDIRTVVHAGVPA
SIDDYYQEIGRAGRDGKPAAAVLVHDPRTIRIPRLLAARTRLGEATLHRVVDAIENAGGH
IAIAQLVASADVPAHAADRVVNELAELGFLSLTGSGQHRAAEPGRELPPPAELTGQLVDL
NKRRQAVLAGRLAAAREYAESTRCRRAELLAYFGENYVPPCGNCDNDRFSAATAGSRPSV
GGGVPVRHRLWGRGGC
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
ttgttcgtcgtcgacgaggcgcatctggtcagcgagtggggcgaggagttccggccggaa
tacctgcggctgggcgacgcgatcgccgagctgggccgcccggcggtcctcgccctgacc
gcgacggcgtccccgcccgtccaagcggacatcacgcgtcgcttgaagatgcggtctccg
gacgtcgtggtcgcggacttcgaccgcccgaacatcgcactcgccatgcggcagacccag
ccgggcgaacgagaagcgcaggctgtcgacgaccggtgtgtcgaggtcctgatcgagcag
gagacgcctgccctgatctacgcactcacccatgcccggtgcgagtcgctcgccgatcgc
ctgcgcctggatgcgttccgggccgctccctaccacggcggcatgaccgccggcgcccgc
gcgcgcgtccaggacgagttctccgcggggcagctcgacgtggtggtcgccaccagcgcc
ttcggcatggggatagacaagcccgacatccggaccgtggtgcacgccggcgttcccgcg
agcatcgatgactactaccaggagatcggacgggcgggccgcgacggaaagccggctgcc
gcggtcctcgtccacgacccgcgcaccatccgcatacccaggctcctcgcggcccgcacc
cggctgggcgaggccaccctgcaccgggtcgtcgacgcgatcgagaacgcgggcgggcac
atcgccatcgcgcagctggtggcttccgcggacgtcccggcgcacgccgccgaccgggtc
gtcaacgaactggccgaactgggattcctcagtctcaccggttccggtcagcaccgcgcc
gccgagcccgggcgagagctgccgccgcccgccgagctgaccgggcagctggtggatctg
aacaagcggcggcaggccgtgctggccggccggctcgccgctgcgcgcgagtacgcggag
agtacgcgatgccgccgggcggaactgctggcgtatttcggcgagaattacgtgccgccc
tgcggaaactgcgacaacgaccggttttcggcggccacggcgggttcccgcccgtcggtc
ggcggcggagttcccgtgcgtcatcggctctgggggaggggcggctgctga
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