Acetobacter aceti: A0U92_05385
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Entry
A0U92_05385 CDS
T04735
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aace
Acetobacter aceti
Pathway
aace03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aace00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A0U92_05385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aace03400
]
A0U92_05385
Enzymes [BR:
aace01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A0U92_05385
DNA repair and recombination proteins [BR:
aace03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A0U92_05385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
SecA_DEAD
AAA_16
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AQS86282
UniProt:
A0A1U9KKF5
LinkDB
All DBs
Position
1192820..1196311
Genome browser
AA seq
1163 aa
AA seq
DB search
MDVDERSPKTAATPVKGTAIWGAPDGFDALLLVKRAREHNGPVLHVAKDDAALNRLGEAL
DYMGEKTEVLRFPAWDCLPYDRVSPNPVLIAERVATLTRLLEPTKAKGGRIVLTTPAALM
QRVAPRSAFEGQSLEVAQGENLDQSFLIELLVANGYTRTDTVMEPGEFASRGGIFDLFPA
GQAEPVRLDLFGDEVENIRYFDPGTQRSTGKAERLTLRPVSEFSLDPDSISRFRSAWRDQ
FGQAAATDSLYEHVSEGRRYTGIEHWLPLFHGDMETLFDYLKNPAISLDHQVDESLAARM
EMVQDHYEARKTPPREGETPYRALPPHLLYLDRKGWDAALSRFPVTKFSPFAKPDGAEGI
DAGGRPGIMFAKMAPQGEREKVFDLIADYAQQWAQTKRRCFVTAWTKGSRERIKTLLMEH
RVAVETFDSWDPASKMKAGAVGLLIFGIERGFVGDDIAIVSEQDLLGERIGRPPRKRRRA
DELISEAGEITEGDLVVHQDYGIGRYDGLETVSVGVAPHDCLRLLYDGGQKLYLPVENIE
LLSRFGSDQAGVALDKLGGVAWQARKSKMKERIRDMAGALIRTAAARALREAPSLAPPEG
LWEEFCARFPFVETDDQARAIADVIEDMASGRPMDRLVCGDVGFGKTEVALRAAFVAAMS
GTQVAVVVPTTLLARQHFRTFETRFEGFPIHVAQLSRMVTAKQATEVRKGITDGTVNIVI
GTHALLAKTVKFADLGLLIIDEEQHFGVNHKEKLKALREDVHVLTLSATPLPRTLQLSLS
GVREMSLIATPPTDRLAVRTFIMPFDSVVIREAIQRERFRGGQIFCVAPRVEDLNRLAER
LADIVPDAKVVQAHGQLSPTELERVMTEFADGKYDILLSTNIVESGLDMPSVNTLIIHRA
DMFGLGQLYQLRGRVGRGKQRGYAYLTWPQTHLLSAAAQKRLEIMQTLDTLGAGFTLASH
DLDLRGAGNLLGDEQSGHIREVGIELYQQMLQDAVADLRAEKGKAKREDRDWTPNIVLGL
PVLIPDSYVTDLPVRLSLYRRIASLASAAEDEAMEAELVDRFGAVPPELKNLLDVVAIKR
SCRAAGVERVEAGPKGMVIQFRGNQFANPEGLIRWMGKWTDGLIRIRPDHKLSIVRELLN
AQRVGLAQKVTTVLAKLAAKVEG
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggatgaacgctctcccaagactgctgctaccccggtaaaaggcactgcaata
tggggtgcgcctgatggtttcgatgcgcttctgctggtcaagcgtgcacgggagcataat
ggtcctgtgctgcatgtcgccaaggacgatgctgccctcaatcggcttggcgaggcgctg
gactacatgggggagaagaccgaagttctgcgctttcccgcgtgggactgtctcccgtat
gatcgcgtttctcccaatccggttctgatcgccgagcgtgtcgccaccctgacgcgcctg
ctggaaccgacgaaagcgaaaggcggacggatcgttcttacgacgcctgccgctcttatg
cagcgtgttgcgccccgctcggcgtttgaaggtcagtctctcgaggtcgcgcagggcgaa
aacctcgatcagtcctttctgatcgaactgctggtcgccaatggttacacccgaaccgac
acggtgatggaaccgggggaattcgcctcccgtggcgggatttttgacctgtttcccgca
gggcaggcagagccggtccggcttgatctgttcggcgacgaggttgagaacattcgctac
ttcgaccccggcacccagcgttcgacgggcaaggcggagcgtctgacactgcgtcccgta
tccgagttctcgctcgatcctgacagtatttccagattccgctctgcatggcgtgaccag
ttcgggcaggctgccgcgaccgattcgctctatgagcatgtgagcgaaggacgtcgctat
accggaattgaacactggttgccgctattccatggggacatggaaaccctgttcgactat
ctgaaaaatccggccatctccctcgatcatcaggtcgatgaatctctcgcagcccgtatg
gagatggtgcaggaccattacgaggcgcgaaagacaccgccgcgtgaaggagagacacct
tatcgcgccctgccgccgcatctgctgtatcttgatcgcaaggggtgggacgccgcgctg
tcacgcttcccggtcacgaagttcagtcccttcgccaaaccggatggcgcggaagggatt
gatgcgggcggtcgccccggcatcatgttcgccaaaatggcgccgcagggtgagcgcgag
aaggtcttcgatctgatcgctgattacgcgcagcaatgggcgcagacgaaacgacgctgt
tttgtcaccgcgtggaccaaaggctcccgtgagcggatcaagacgctgctcatggagcat
cgtgtagcggtcgagaccttcgatagctgggaccccgccagcaagatgaaggcgggagcg
gtcgggctgctgatcttcggtatcgagcgtggttttgtcggcgacgacatcgccatcgtt
tccgaacaggatctgctgggtgagcggattggtcgcccgccgcgtaaacgtcgtcgcgct
gatgaactgatttccgaagcgggcgagatcaccgagggtgatctggtcgtccatcaggat
tacggcatcgggcggtatgacgggctggagacggtcagtgtcggcgtcgcgccgcatgac
tgtctgcgcctgctctatgacggtgggcagaagctgtatctgccggtcgagaatatcgaa
ctgctgagccgcttcggctccgatcaggccggtgtggcgctcgacaagctcggtggcgtg
gcgtggcaggcccgcaagtccaagatgaaggagcgtatccgcgatatggcgggcgcgctc
atccgcacggcggcggcgcgcgcgctgcgtgaagcgccttctctggcgccaccggaaggt
ctctgggaggagttctgcgcccgcttcccgtttgtggaaacggacgatcaggcccgcgcc
attgccgatgtgattgaggacatggcgtccggccggccgatggatcgtctcgtctgcggc
gatgtcgggttcggaaagaccgaagtggcgttgcgggcggctttcgtggcggcgatgtcc
ggcacacaggtggcggtcgtggtgccgaccacactgctggcccgtcagcatttccgcacc
tttgagacgcggtttgaagggttcccgattcacgtcgcgcagctttcgcggatggttacc
gccaagcaggcgacggaggtccgcaagggcatcaccgacggcacggtcaacattgtgatc
ggcacgcatgcgctgttggcgaagactgtgaaattcgccgatcttggcctgctgatcatt
gatgaagagcagcacttcggtgtgaaccacaaggaaaagctgaaagccctgcgcgaggac
gtgcatgtgctgacgctctccgccacgccgctgccacgcacgctccagctttcgctgtcc
ggcgtgcgtgaaatgagcctgatcgccacaccgccaaccgatcgtctggccgtccggaca
ttcatcatgccgttcgacagcgtggtgatccgtgaggcaatccagcgcgaacgcttccgt
ggcggccagattttctgtgtcgcgccgcgtgtggaagatctgaaccgtctggccgaacgg
ttggctgacatcgtgcctgatgcgaaagtcgtgcaggcgcatggtcaactgtcaccaacc
gagcttgagcgggtgatgacggaatttgctgatggcaaatacgacattctgctttccacc
aacattgtggaaagtggactggacatgccgtccgtcaacacgctgatcatccatcgcgcc
gacatgttcggacttggtcagctttaccagcttcgtgggcgtgtagggcgcggcaagcag
cgtggttacgcctatctgacatggccgcagacccatctgctgtccgccgccgcgcagaaa
cgtcttgagatcatgcagacgctcgacacgctgggggcgggcttcacgctggcctcgcat
gaccttgacctgcgtggggcgggtaacctgctgggcgatgagcagtccggtcatatccgt
gaagtgggcatcgagctttaccagcagatgttgcaggatgctgtggcggatctgcgggct
gaaaaaggcaaggccaagcgggaagaccgcgactggacgccgaacatcgtgctgggtctg
ccggttctcattcccgacagctatgtcacggatctgcctgtcaggctcagcctgtatcgc
cggatagcctcgctggcgtcagccgccgaggatgaggcgatggaggccgaactggtggat
cgttttggagccgtgccgcctgaactgaaaaacctgctcgacgtggtggcgatcaagcgg
tcctgtcgcgccgctggcgtcgagcgcgtggaggcgggtccgaaagggatggtgatccag
ttccgtggcaatcagttcgccaatcctgaagggcttatccgatggatggggaagtggacg
gatggtctgatccgtattcgtccggaccacaaactgtccatcgtgcgtgaactgctcaat
gcgcagagggttggtctggcacagaaggtaacgactgttctggcgaagctggcggcaaaa
gtggaagggtga
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integrated database retrieval system
