Aggregatibacter actinomycetemcomitans NUM4039: AANUM_0122
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Entry
AANUM_0122 CDS
T04531
Name
(GenBank) DNA-directed RNA polymerase sigma subunit RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
aacn
Aggregatibacter actinomycetemcomitans NUM4039
Pathway
aacn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
aacn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AANUM_0122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aacn03021
]
AANUM_0122
Transcription machinery [BR:
aacn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AANUM_0122
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
YL1
SEEEED
Sporozoite_P67
Motif
Other DBs
NCBI-ProteinID:
BAS47353
LinkDB
All DBs
Position
120876..122726
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AA seq
616 aa
AA seq
DB search
MDQNPQSQLKLLIAQGKEQGYLTYAEVNDSLPEELVDADQIEDIIQMINDMGIQVLETAP
DADDLMLNENITDEDVVEEATQVLSSVEAELGRTTDPVRMYMREMGSVELLTREGEIDIA
KRIEEGINEVQSAIAAYPEAITYLIEQYDLVENGGVRLADLITGFVDPNVLTESETEELA
EDFNSEEGGDIDSESEEEEDNEGGSSDDSDSDNSVDPEIAREKFTALKQQHQKTLESIAK
HGRTAKKAKDEIQVLSDIFTQFRLVPKQFDMLVLSIRGIMKRVRGQERFIQRIVVDNAKM
PKSGFQKSFIGHETTDTWLVKALSAGKSWSEKLVQYENQLRQAITNLVQIEQDTHLTIPQ
IREIGERITQGELKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
ASPEELAERMGMPEDKIRKVLKIAKEPISMETPIGDDDDSHLGDFIEDSTLELPLDSATV
QSLKAATHEVLEGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPSRSETLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaaatccacagtctcaattgaaactactcatcgcgcaagggaaagagcaaggt
tatttaacctacgccgaagtcaatgacagcctccccgaagaattagtcgatgcagatcaa
attgaagatattattcagatgatcaatgatatggggattcaggtgttagagaccgcgccg
gatgccgatgatctgatgctcaatgaaaatatcaccgatgaagatgtcgttgaagaagca
acccaagtattatccagcgtggaagcggaattagggcggactaccgaccctgtgcgtatg
tatatgcgtgaaatgggtagcgtagaattacttacccgtgaaggcgaaattgacattgcc
aaacgcattgaagaaggtattaacgaagtacaaagcgccattgccgcttaccctgaagcc
atcacttacttaattgagcaatatgatttggtagaaaatggcggtgtacgcttagccgac
ttaattaccggtttcgttgatcctaatgtgctaaccgaatccgagactgaagaattggca
gaagattttaattccgaagaaggtggcgatattgatagtgaaagcgaggaggaagaagat
aacgaagggggaagtagcgatgacagtgatagtgataacagtgttgatcctgaaattgca
cgggaaaaatttaccgcacttaagcagcaacatcaaaagaccttagagagcattgccaaa
catggccgtacggcgaaaaaagcaaaagatgaaattcaagtgttatcagacatcttcact
caattccgcttagtaccaaaacaattcgatatgctagtgctatctatacgtggtattatg
aaacgtgttcgcggtcaggaacgtttcattcagcggattgtggtggacaatgccaaaatg
ccaaaatccggtttccaaaaaagctttataggacatgaaacaactgatacgtggttagtg
aaagccttgtctgccggtaaatcctggtcggaaaaattggtacaatatgaaaaccaatta
cgccaagccatcaccaatttggtgcaaatcgaacaagatacccatctgacgattccacaa
atccgagaaatcggtgagcgcatcacacaaggtgaattaaaagcccgtcgtgcaaaaaaa
gaaatggtagaagcaaatctgcgcttagtaatttctattgctaaaaaatacaccaatcgc
ggattacaatttcttgatcttattcaagagggtaatatcggcttaatgaaagcagtggat
aaatttgaataccggcgcggctataaattctctacttatgccacttggtggattcgtcag
gcaattacccgttctattgccgatcaagcccgcaccattcgtattccggtacatatgatt
gaaactattaataaactcaatcgtatttcccgtcaaatgctgcaggaaatgggacgcgaa
gcctcaccggaagaactggcagaacgtatgggcatgccggaagataaaatccgtaaagtg
ctgaagattgcgaaagagccgatttcgatggaaaccccaattggcgatgacgacgattcc
catttaggcgattttatcgaggattccactttagagcttccgctagattccgcgaccgtg
caaagcctgaaagcagcaacgcatgaagtactggaaggtttaaccccacgggaggctaaa
gtcttgcgtatgcgctttggtattgacatgaataccgatcatactttagaagaggtgggt
aaacaatttgacgtaacccgtgaacgtattcgccaaatcgaagccaaagcgttacgtaaa
ctgcgccatccaagccgttccgaaactttacgcagctttctggatgagtaa
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