Aggregatibacter actinomycetemcomitans NUM4039: AANUM_1798
Help
Entry
AANUM_1798 CDS
T04531
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
aacn
Aggregatibacter actinomycetemcomitans NUM4039
Pathway
aacn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aacn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
AANUM_1798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aacn03400
]
AANUM_1798
Enzymes [BR:
aacn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
AANUM_1798
DNA repair and recombination proteins [BR:
aacn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
AANUM_1798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_12
ResIII
AAA_25
AAA_30
DotA
Motif
Other DBs
NCBI-ProteinID:
BAS49029
LinkDB
All DBs
Position
complement(1788334..1791999)
Genome browser
AA seq
1221 aa
AA seq
DB search
MQAFNPISIPLNAINLIEASAGTGKTYTMGSLYLRLLLQAGENVFPHSLNVEQILVVTFT
EMATEELKRKIRERIYAAKQKLTAYQQTQDPAVFEQDEFLRQLADTITDFPLAIQRLTLA
EQNMDLAAIYTIHGFCRRMLMQYAFNSGIHFNLELSGEEDELLLHLAQKLWRAHFYSQPY
TVAEFIQKHLISPANVIHNIKKFAGTELKLPQNRPHFFDGTLPDFLTKLADYSQQFAAQT
AEVKKHWLENEADIAQLLETEVNTKYKSAKEQKLNRRSFTSTTRPKWLAMMKAWAESDKA
DFPDCFSRFGQTAMNEQKGEEAKDALTHLLFVEIDELLQLAEQQALLSQALWFHYLQMLN
AQLVEYKLNHSEKSFNDLLRLLKEALYHPDNTEFARLIRYQFPFAMIDEFQDTDAVQYQI
FSKIYVEQPQTDAQSDSGFIMIGDPKQAIYKFRGADIFTYFQAARQAQHRFNLTKNYRSH
QNVVDCVNRLFDFREQPPFLYKDIQFMSVGARTDHPQFWLSGQPEPAVRFYVDEASVKEN
MAKACAISIQHWLQSAVENSAVFRLDDGDEKTLKPESIAVLVRSRKEAELVKNELRHLGI
ASVYLSEDSNVFDSSAAKDLLMILTACLNPFSERHILNAIATAIFAQTSADIQRIRMDET
RWEHWVEKFIHYQRTWQKQGVLVMLHQLFQQEKITEKLYPTVDGKRLVTDLLHLAELLQE
AATLNESEAALLRWFEKQIQGENRQKEQQIRLESELQLVKIVTIHKSKGLEYDLVWLPFI
GYASTFRGDRIATYYDEAQGAVLWDYDKSHEALVQQEDFAEQLRLLYVALTRAKYQLVIG
VPQTFEQKWSSLLYVLTQGEIPINEKPKAYDSRPLLEKLAERALQGSVQIANTADLIPLP
LQAHAEAQIPLHAAKFTGNIEQNWTVTSFSAMEAIHQNKAYFKAQQMAESAVDFPSVFDL
GKDYDFNEQGQSTESIQETETDESVYPFGYSPFDFPHGINIGTALHRFLEKTDFDRPLNE
DKIQKLCQWLQLEETWLPSLQQWINAILHTPLSTQDPTLQLVNLNCQHCVKEMQFYLKLN
QTFDVAAFNQALQQHHHLPSEPLQFEAIKGMLRGFMDLVFYHNGKYYLADYKSNFLGVEA
QNYVGTSLQQAMLTNHYDWQYLFYTLALHRYLQQRDANYDYDTHFGGVFYCFLRGMNGEN
QNGVFFDKPDYALIQALENLF
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcattcaatccgatttccattccgttaaatgccatcaaccttattgaagcctct
gcagggacgggcaaaacctacactatgggttctctttatttgcgtctgttgttgcaggcg
ggggaaaatgtgtttcctcacagtttaaatgttgagcaaattttagtggtgacttttacc
gaaatggcaacggaggaactgaaacgcaaaattcgtgaacggatttatgctgccaaacaa
aaattgacggcgtatcaacaaacgcaggatccggcggtgtttgaacaagatgaattttta
cgccaattagccgacaccatcacggatttccctcttgccattcagcgcctgactttggcg
gaacaaaacatggatttggcggcgatttataccattcatggattttgccgtcgaatgctc
atgcaatatgcgtttaattcgggcattcacttcaacttggaattaagcggtgaagaagac
gaattattgctgcatttggcgcaaaaactgtggcgggcacatttctattcgcagccttat
accgttgccgagtttattcaaaaacacctaatttcaccggcaaacgtcattcacaatatc
aaaaagtttgccggcacggaattaaaacttccgcaaaatcgaccgcacttttttgacggc
acactgcctgactttctcaccaaacttgccgattattcgcaacaatttgccgcacaaact
gcggaagtgaaaaagcactggttggaaaacgaagcggacattgcgcaattacttgaaacg
gaagtaaacaccaaatataaaagcgcaaaagaacaaaaattaaaccgacgcagtttcacc
tccacaacccgtccgaaatggcttgccatgatgaaagcatgggcggaaagcgataaagcg
gattttccggattgtttttcccgtttcgggcaaacggcgatgaatgagcaaaaaggcgaa
gaggcaaaagacgccttgactcatttgctttttgtcgaaattgatgaactactgcaactc
gccgaacaacaggcgctattgtcccaagccttgtggttccattatttacaaatgctgaat
gcgcagctggtggaatacaaactcaaccacagcgaaaaaagttttaacgatttgttacgc
ttgctgaaagaagccttgtatcacccggacaatacggaatttgcccgcctgattcgttat
caatttccttttgccatgattgatgaatttcaggacacggacgcggtgcaatatcagatt
ttttctaaaatttatgtggaacaacctcagacagacgctcaatctgatagcggctttatt
atgattggcgacccgaaacaggcgatttataaattccgtggcgccgacatttttacttat
ttccaagccgcccgccaagcgcaacatcgttttaatttaacgaaaaattaccgctcccat
caaaacgtggtggactgtgtgaatcgtttatttgattttcgcgaacaaccgccgtttctc
tataaagacattcaatttatgtcggtcggcgcaagaacggatcacccgcaattttggtta
agtgggcagccggagcctgcggtgcgtttttatgtagatgaagcctctgttaaagaaaac
atggcaaaagcttgcgccatttctatccaacattggctacaaagtgcggtggaaaattct
gccgtttttcgccttgatgatggtgacgaaaaaacgctgaagccggaaagtatcgccgtg
ttggtgcgtagccgtaaagaggccgagttggtgaaaaatgaattgcgtcacttgggcatt
gcctccgtgtatttgtctgaagacagcaatgtgttcgacagcagcgcggcaaaagatttg
ttaatgattctcacggcgtgcctcaatccgttttccgaacgccatattttaaacgccatt
gccacagcaatttttgcccaaaccagcgccgatattcagcgcattcgtatggatgaaacc
cgttgggagcattgggtggagaagtttattcattaccaaagaacctggcaaaaacaaggc
gtgttggtgatgttacatcagttgttccagcaggaaaaaatcacggaaaaactttacccc
acggtggacggcaaacgcttggtgacggacttgctgcatttggcggaattgctgcaggaa
gcggcgaccctgaacgaaagcgaagcggcattgttacgttggtttgagaaacaaattcaa
ggggaaaatcgccaaaaagagcaacagattaggttggagagcgaattgcagttggtgaaa
atcgtcactattcataaatccaaggggttggaatacgatctggtttggttgccgtttatc
ggctatgcctccactttccgaggtgatcgtattgccacttattacgacgaagcacaaggc
gcggtgctgtgggattacgataaatcccatgaagcgttggtgcaacaggaagattttgcc
gaacagctacgcttgctttatgtggcgttgacccgcgccaaataccagttggtgatcggc
gtgccgcaaacctttgagcaaaaatggagcagtttgttatatgtgctgacccaaggtgaa
atcccaatcaatgagaaaccgaaggcttatgatagccgccccttattggaaaagcttgcc
gaacgcgcgctgcagggcagtgtacaaattgccaacacggcagatttgataccgctgcca
ttgcaagcccacgccgaagcacagataccgttacacgctgcaaaattcaccggcaatatt
gaacaaaactggacggtcaccagtttcagtgccatggaagccattcatcagaataaagcc
tatttcaaggcgcagcagatggcggaaagtgcagtcgattttccaagtgtttttgactta
gggaaagactatgattttaacgaacaagggcaatcaaccgagagtattcaggaaacggaa
accgatgaatccgtctatcctttcggctattcgccttttgatttcccgcacggtattaac
atcggcacggcattacaccgttttctggaaaaaacagattttgatcgcccgttaaacgaa
gacaaaatccaaaaactctgccaatggttacagttagaggaaacctggctaccgtctcta
cagcaatggataaacgccattttgcatacgccgttaagcacgcaggatcccaccttacaa
ctggtgaatttaaactgccaacattgcgtgaaagaaatgcagttttatttgaagttaaat
caaacatttgacgtggcggcgtttaatcaagcgttacaacagcatcaccacttaccctca
gaacccctgcaatttgaagcgattaaaggaatgttacgcggtttcatggatttggtgttt
tatcataacggaaaatattatttggcggattacaaatccaattttcttggcgtggaagcg
caaaactacgtcggcacaagccttcagcaagccatgctaactaatcattacgactggcaa
tatttattttacacgctggcattgcaccgttatttacaacaacgtgacgcaaactatgac
tacgacacccatttcggcggcgtgttttattgtttcttacgtggcatgaacggcgaaaat
cagaacggcgtgttttttgataaaccggattacgcgttgattcaggctttggagaatttg
ttctaa
DBGET
integrated database retrieval system
