Alicyclobacillus acidoterrestris: K1I37_05400
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Entry
K1I37_05400 CDS
T08106
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aaco
Alicyclobacillus acidoterrestris
Pathway
aaco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K1I37_05400 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaco03019
]
K1I37_05400 (rnr)
03016 Transfer RNA biogenesis [BR:
aaco03016
]
K1I37_05400 (rnr)
Enzymes [BR:
aaco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K1I37_05400 (rnr)
Messenger RNA biogenesis [BR:
aaco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K1I37_05400 (rnr)
Transfer RNA biogenesis [BR:
aaco03016
]
Prokaryotic type
tRNA degradation factors
K1I37_05400 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
UNO49936
UniProt:
T0BWH4
LinkDB
All DBs
Position
1157903..1160788
Genome browser
AA seq
961 aa
AA seq
DB search
MQREELLEYMESDIYKPLTVQELSEVLGQTSASEFRDLVKLLTQLEDEGAVVRTKHNRYA
LPDTAGLVVGKLQMKARGFGFVISERDGEPDVYIPATEMNGAMSGDKVMAKVQNEGRGGA
HREGTILRVVERANERIVGKITIYAHHAFVNPIDKRFTQDIFIPKEEIRDAHDGYIVVVE
LTSFPSATHGPVGRIVEVLGHPDEPGVDILSVVRKYGLPEEFPEKVLRATEAIPLEIAED
ELKNRRDLRDEPMVTIDSESAKDLDDAVHVKLLENGNYLLGVHIADVGYYVKQGGAIDQE
AFRRGTSVYLVDRVIPMLPPRLSNNICSLNPQVDRLAFSCQMEIDAEGHVVNHDIFPSVI
KTTARITYNNVRKILEDNDEALIEEYKELVPMFRHMEQLALILRQKRMRRGAVDFDFEEI
YVKVNDLGEPIDIIPRQRSIAERLIEEFMLAANETVAEHFHWLGVPFVYRVHDEPDADKM
ITLNAFLHNFGYHLKGAGGSKVHPRALQEVLNEVEGSREARMIATVMLRSMQQAKYKPEC
TGHFGLAAEYYTHFTSPIRRYPDLTIHRIMREVLAGPLSPEREAELRQFVEDASRQSSER
ERLAQDAEREVDQLKMVEYMQAHLDEEFDGIISSVTQFGIFVQLDNGVEGLIHISALDDD
YYVFNERQMALIGERNRRVFRLGDPVRIVVTSASKEELQINFGLVEHRREATFVADHGGG
GAIIYDEDLSPSERRQSILRRESRSSAAPKGTRSAVRSGGLKGRSRRDKLAGHTVEGGYG
RSGRTRDAELPVDMPYDEWDADFPDPREAREQAQAEREGRREGHRDAHRAADSGRRRTTG
GRRGERSGRSDRDTRRDASSRYADREDAAENGVRRSADGRTGGYRTWAARGGESAGGDRR
RSGPGGAADDRAGAGHGDGHKPRKKHRGSVKTGAKMATRKAGGRSVTSGGGRSTGKKRKS
R
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgggaagagttattggaatacatggaaagtgacatttacaagccgttgacggta
caggaactgagcgaagtgcttggtcagacgtcggcgtctgaatttcgcgatctcgtcaag
ctgctcacgcagttggaggacgagggcgctgtcgtgcgcaccaagcacaaccgttacgcg
ttgccagacactgcaggtcttgtcgtcggcaaactgcagatgaaagcgcgcgggtttggt
ttcgtcatttctgagcgcgacggtgaaccggatgtttacatccctgccactgagatgaac
ggcgcgatgagtggcgataaggtcatggcgaaggtacaaaacgaaggtcggggcggcgcg
caccgcgagggaacgattctccgcgtcgtcgagcgcgcaaatgagcgcattgtcgggaaa
atcacgatttatgcgcaccatgcgtttgtcaatccgattgacaagcgcttcacccaggac
attttcattccgaaggaggagattcgcgacgcgcacgatggctatatcgtggtcgtggag
ctcacgtccttcccgtctgccacacatggacccgtgggtagaattgtcgaagttctgggc
cacccagatgaacctggcgtggacattttgtcggtggtgcgcaagtatggcctgccagag
gagttcccggagaaggtattgcgcgcgaccgaagcgattccgctagagattgctgaggat
gagttgaaaaatcgccgtgacctacgcgatgaacccatggtgaccatcgacagcgagtcg
gcgaaagacctcgacgacgccgtccatgtcaaattgctggagaacgggaactatttgctc
ggcgtgcacatcgccgacgtcggttattacgtgaaacaagggggcgccatcgaccaagag
gctttccgccgtggcaccagcgtgtatttggtcgaccgggttatccccatgttgccgccg
cgcttgtcgaacaacatttgttcactgaatccccaggtggacaggctggcgttctcgtgt
cagatggagattgacgcggagggacacgtggtcaaccacgacattttcccgagcgtcatc
aagacgacggcgcggatcacgtacaacaatgtgcgcaaaatcctcgaggacaacgatgag
gcgttgattgaggagtacaaggaactcgtgccgatgttccgccacatggagcaactggcg
ctcatcttgcgccaaaagcggatgcgccgtggcgctgttgacttcgacttcgaggaaatt
tacgtcaaggtgaacgatctcggcgaacccatcgacatcatcccacgccagcgctccatc
gccgaacggctgattgaggagtttatgctcgcggccaacgagacggtcgcggaacatttc
cattggctgggcgtgccgtttgtgtaccgcgtgcacgacgagccggacgctgacaagatg
atcacgctgaacgcctttttgcacaatttcggttaccacctgaaaggggccggtggcagc
aaagtccatccgcgcgccttgcaggaagtgctcaacgaggtcgagggttcccgggaggcg
cgcatgattgccacggtgatgctgcgatcgatgcagcaagccaaatacaaacccgagtgc
acaggccactttggcctcgcggccgagtactacacgcacttcacgtcgccgattcgccga
tatccggatttgaccatccaccggattatgcgggaagtgctcgcaggccccttgtcgccc
gagcgcgaggcggaactccggcagtttgtggaggatgccagccggcaatcgagcgagcgc
gagcgcctcgcccaggacgctgagcgcgaagtggaccaactcaagatggtcgaatacatg
caggcgcacctcgacgaggaattcgacggcatcatctcgagcgtgacgcaatttggcatc
ttcgtgcaactcgacaacggcgtcgagggcctcattcacatcagcgcgctggacgacgat
tactacgtcttcaacgagcgacaaatggcgctgattggtgaacgcaatcgccgcgttttc
cgtctgggggatcccgttcgcattgtcgtcacgagcgcaagcaaggaagaactgcaaatt
aactttgggctggttgagcatcggcgggaggccacgtttgtggctgaccacggcggtggt
ggcgccattatttacgacgaagatctctctccgtcggagcgccgccaaagtatcctccgc
cgcgaaagccgctcgagcgcggcaccaaagggcacgaggagcgctgtccgatccggcgga
ctcaaaggccgatctcgccgcgacaagttagccggccacacggtcgaaggcggctacggt
cgcagtggccgcacgcgcgacgcggaacttccggttgacatgccgtacgacgagtgggat
gcggatttcccagatccgcgcgaggcccgcgagcaggcgcaggccgagcgtgaaggcagg
cgagaggggcaccgcgacgctcaccgcgccgccgattcgggtcgccgccgcaccacgggt
ggacgtcgtggtgagcggtcgggccgcagtgatcgagatacgcgacgcgacgcctcatcc
cgttacgcagaccgcgaagatgcagcggagaatggcgtccgccgcagcgcggacggccgt
acgggcggataccgcacctgggccgcgcgcggcggcgaatcggcgggcggtgaccgtcgg
cgcagcggcccaggtggggccgcagacgaccgcgctggagcgggccatggcgacggtcac
aagccgcgcaaaaaacatcggggcagcgtcaaaacgggcgccaagatggccacccgcaag
gccggtggccgcagcgtgacgtcgggcggcggacgctcgactggcaaaaagcgcaagagt
cgctaa
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