Aggregatibacter actinomycetemcomitans 624: ACT75_04280
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Entry
ACT75_04280 CDS
T04753
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aact
Aggregatibacter actinomycetemcomitans 624
Pathway
aact03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aact00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ACT75_04280
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aact03019
]
ACT75_04280
03016 Transfer RNA biogenesis [BR:
aact03016
]
ACT75_04280
Enzymes [BR:
aact01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
ACT75_04280
Messenger RNA biogenesis [BR:
aact03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ACT75_04280
Transfer RNA biogenesis [BR:
aact03016
]
Prokaryotic type
tRNA degradation factors
ACT75_04280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
RNA_pol_Rbc25
Motif
Other DBs
NCBI-ProteinID:
AMQ93796
UniProt:
A0A5D0ELQ9
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All DBs
Position
892095..894500
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AA seq
801 aa
AA seq
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MAKKHNKSPLQDPNYAKELAKYDNPIPSREFILQIIRKQNSPMSKEEIFAALAISNDEQQ
EAMRRRLHAMENDGQLVFTKRKRYALPEKLDLLKGVVIGHREGFGFLQVEGKKEDFFIPN
VQMQKVMHGDYVLAQANGFDRKGRPEVRIVRLLEANKKQIVGRFFLEQGIGYVVPDDSRI
TRDILIPEEARLGARMGQVVVVELNPRTAPFFQPIGKITEILGDNMAKGMEVEIAIRKHD
IPHAFPSAVEKQLKKWQEEVPEEAKRGRVDLRDLPLVTIDGEDARDFDDAVFCQKQGKGW
KLWVAIADVSYYVRPKSALDQEAYNRGNSVYFPNRVVPMLPEKLSNGLCSLNPQVDRLCM
VCEMTLSAKGKMTDYRFYEAVMNSHARLTYNKVAKILEKDTALCERYAPLVPHLEALHDM
YRALVKARQQRGAIEFETIESKFIFNALGRIERIEPVVRNDAHKIIEECMILANIAAANF
MEKNQESALYRIHALPGEEKLTAFRSFLAECGLTLGGGNKPTPMDYAALLEQIQTRPDRE
LIQTMLLRSISQAVYSADNIGHFGLALSEYAHFTSPIRRYPDLTLHRNIKYLLAKKKGSK
RKTTDTGGYHYQLDEMDVCGVHCSTTERRADDATREVADWLKCEYMQDHVGEEFDGVISS
VTGFGFFVRLNDLFIDGLVHISGLANDYYLFDMPKQRLIGENSGMIFRIGDAVKVRVDAV
NLEQKQIDFALIDSERKPRRRGKTARTKAKKAETAASKKSAKKQPVEKKKTKPQKSAVKN
NGVSKTKPQAAAKNKKAKNKA
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaaaacacaataaatcccctttgcaggatccgaattacgcaaaggaattggcg
aaatatgacaacccgattccgagccgcgaatttatcctgcaaattatccgcaaacaaaac
tctcccatgagcaaagaagagatttttgcagccctcgcgatttccaacgatgaacaacag
gaagccatgcgtcgtcgtttacacgccatggaaaacgacgggcagttggtgtttaccaag
cgtaaacgttatgccttgccagaaaaactggatttgctcaaaggcgtggtgatcggacat
cgggagggtttcggctttttgcaggtggaagggaaaaaagaggattttttcattccgaat
gtgcaaatgcaaaaagttatgcacggtgattacgtactggcgcaagccaacggatttgac
cgtaaaggtcgccctgaggtgcgcatcgtgcgtttattggaggcgaacaaaaagcaaatt
gtcggtcgctttttcttagaacagggcatcggttatgtggtgcctgatgacagccgtatt
acacgtgatattttgatccctgaagaagcccgccttggcgcgcgcatggggcaggttgtg
gtggtggaactgaacccgcgcaccgccccgttcttccaaccgatcggtaaaattaccgaa
atcctcggcgataacatggcaaaagggatggaagtggaaattgccattcgcaagcatgac
attcctcacgcgttcccaagtgcggtggaaaaacaacttaaaaaatggcaggaagaggtg
ccggaagaggcaaaacgcgggcgcgtggatttgcgtgatttgccgctggtgaccattgac
ggcgaagatgcccgcgattttgacgacgcggtgttctgccaaaaacaaggcaaaggctgg
aaactgtgggtggcgattgccgatgtgagctactatgttcgaccgaaaagcgccttggat
caggaagcgtataatcgaggcaactctgtgtatttcccgaatcgggtggtgccgatgttg
ccggaaaagctctccaacgggctatgttctttaaatccgcaggtggatcggctgtgcatg
gtatgtgaaatgacgctttccgctaaaggcaaaatgacggactaccgattttacgaagcg
gtgatgaactcacacgctcgtttaacctacaacaaggtcgcaaaaatactagaaaaagac
accgcactttgcgagcgttacgcgcctttagtgccgcatttagaggcgctgcacgatatg
tatcgggcgctggtgaaagcccgtcaacagcgcggtgccatcgaatttgaaaccatcgaa
agcaaatttatttttaatgcgttggggcgtattgaacgtatcgaaccggtcgtgcgcaac
gatgcccataaaatcattgaagaatgtatgattttggcgaatattgctgccgccaatttt
atggagaaaaatcaggaatctgcgttgtaccgcattcacgccttgccgggagaagaaaaa
ctcacggcgtttcgcagtttcttggcggaatgcggcttaacgctgggcggtggcaataaa
ccgacgccgatggattatgctgcgttgctggaacaaatccaaacgcgccccgatcgcgaa
ttgattcaaaccatgttattgcgctctattagccaggcggtgtatagcgccgataatatc
ggacatttcggcttggcattgagcgaatacgcgcattttacatcgccgatccgccgttat
cccgatttaactttacaccgcaatatcaaatacttgttggcgaaaaagaaaggttccaaa
cgtaaaaccaccgacaccggcggttatcattatcagcttgacgaaatggatgtctgcggc
gtccattgttccaccacggaacgtcgtgctgatgacgccacccgagaagtggcggattgg
ctgaaatgcgaatatatgcaggatcatgtgggtgaagaatttgacggtgtgatttcctcc
gtcaccggttttggctttttcgtccgcttaaacgacttatttattgacggcttggtacat
atttccgggctggcgaacgattattatttgttcgatatgccgaaacagcgtcttatcggt
gaaaacagcggcatgattttccgtatcggcgatgcggtgaaagtgcgggtggacgcggtg
aatctggaacaaaaacaaattgattttgccctgattgacagtgaacgtaaaccaagacgc
cgtggcaaaacggcgagaaccaaagcgaagaaagccgaaaccgcagcctctaaaaagtca
gcgaaaaagcaacccgttgaaaagaaaaaaacgaaaccacagaaaagtgcggtcaaaaat
aatggcgtttctaaaacgaaaccgcaagccgcagctaagaataagaaggcgaagaacaaa
gcatga
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