Anas acuta (northern pintail): 137842926
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Entry
137842926 CDS
T11380
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
aacu Anas acuta (northern pintail)
Pathway
aacu03015
mRNA surveillance pathway
aacu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aacu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
137842926 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
137842926 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aacu03019
]
137842926 (PABPC4)
03041 Spliceosome [BR:
aacu03041
]
137842926 (PABPC4)
Messenger RNA biogenesis [BR:
aacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
137842926 (PABPC4)
mRNA cycle factors
Stress granule specific factors
137842926 (PABPC4)
Spliceosome [BR:
aacu03041
]
Complex C
Other components
Complex C specific factors
137842926 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
RRM_3
POP1_C
Motif
Other DBs
NCBI-GeneID:
137842926
NCBI-ProteinID:
XP_068513720
LinkDB
All DBs
Position
21:complement(7793756..7807248)
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AA seq
631 aa
AA seq
DB search
MNAAAASSYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNF
QQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTF
SAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKER
EAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFE
KHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIK
NLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG
SKPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSR
PTYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPAGNAPASRGLPA
AAQRVGVATAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPAVQPLQAPQPAVHVQGQE
PLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESL
RSKVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcggcggcggccagcagctaccccatggcatcgctctacgtgggtgacctgcac
cccgatgtcaccgaggccatgctctacgagaagttcagccccgccgggcccgtgctctcc
atccgtgtctgcagggacatgatcacccgccgctccctcgggtacgcctatgtcaacttc
cagcagcccgccgacgctgagcgtgctctagacaccatgaattttgatgtgatcaaagga
aaacccattcgcatcatgtggtctcagagggacccctccttgaggaagtcaggggttggg
aatgtcttcattaagaacctggacaaatccattgataacaaggcactttatgacacattc
tcagcgtttgggaatattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggc
tacgcatttgtgcactttgagacccaggatgctgcagatagagccatcgagaagatgaac
ggcatgctgctcaacgaccgcaaagtatttgttgggagattcaagtctcgcaaagagcgg
gaggctgagctgggagccaaggcaaaggagttcaccaatgtttatattaaaaacttcggg
gatgacatggatgatgaaagactaaaggagctcttcagcaaatacggtaagactctgagc
gttaaagtgatgacagaccccactggaaaatccaaaggctttggctttgtaagctttgaa
aagcatgaggatgctaacaaggcagtagaagaaatgaatgggaaggatatcaatgggaaa
atggtgtttgtagggcgagcacagaagaaggttgagcgccaggcagagctgaaacggaag
tttgaacagctaaaacaagagagaatcagccggtaccagggagttaacctgtacattaaa
aacctagatgacactatagatgatgaaaaactgaggaaggagttctcacctttcggatca
ataacaagtgccaaggtgatgctggaagatggacggagcaaagggtttggcttcgtctgc
ttttcctctccagaggaagccacaaaagctgtgacagagatgaatggacgaattgtgggc
tcaaagccattgtacgttgcactcgcacaaaggaaagaagagcggaaggcccatctaact
aatcagtacatgcagcgcattgctgggatgagagccttgcctgccaacacaatcatcaat
cagttccagcctgctgctggggggtatttcatgcctgctgtaccccaggcccagagcaga
cccacttactatgcacccaaccaaatgacgcagatgagacctaacccacgctggcagcaa
ggaggacgacctcaaggcttccagggaatgccaaatgccatgcgtcagtctggaccacgg
ccagcactgcgccatctggcccctgccggcaatgccccggcctctcgtggcctccctgct
gctgcccagcgagttggtgttgccactgcagcacagaacttagctcctcgtccacctgta
gctgcccccgctcccagagcggttcctccttacaaatacgcctcaagtgtccgcagcccg
cacccagccgtacagcctttgcaggcacctcagcctgcagtccacgttcagggacaggag
cctctaacagcctccatgctggctgctgcccctcctcaggagcagaaacagatgctggga
gaacgtttgttccctctgattcaagctatgcaccccagtcttgcagggaagatcacagga
atgctgctagagattgacaactcagagctgctgcacatgctggagtctccagagtccctc
cggtcaaaggtggaggaggctgttgcagtgttgcaggctcaccaagccaagaaagaagct
gcccagaaggtgggtgtggttgctgctacctcttaa
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