Anas acuta (northern pintail): 137844388
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Entry
137844388 CDS
T11380
Symbol
CASC3
Name
(RefSeq) LOW QUALITY PROTEIN: protein CASC3
KO
K14323
protein CASC3
Organism
aacu Anas acuta (northern pintail)
Pathway
aacu03013
Nucleocytoplasmic transport
aacu03015
mRNA surveillance pathway
aacu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aacu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
137844388 (CASC3)
09122 Translation
03013 Nucleocytoplasmic transport
137844388 (CASC3)
03015 mRNA surveillance pathway
137844388 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aacu03019
]
137844388 (CASC3)
Messenger RNA biogenesis [BR:
aacu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
137844388 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
137844388
NCBI-ProteinID:
XP_068516841
LinkDB
All DBs
Position
25:2198494..2210067
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AA seq
733 aa
AA seq
DB search
MADRRRQRASQDSEDDSDSAASDSADSAASAARSRSRSRSGSASRSGSASRSRSPSASPR
PPHRQARGAAGALSAGPRGRGAESAAGGAAKSEPQSECESEDGIEGDAVLSDYESAEDSE
AEEEDYSEEESAKVELKQESNDSCESAAKAEKGDEKPEAKGAVTGERQSGDGQESTEPVE
NKVGKKAPKHLDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWE
HDKFREDEQAPKTRQELIALYGYDIRSAHNPDDIKPRRMRKPRFGSPPQRDPNWSGERPS
KPPRHQGADSTTASPRTFTSRSSAGTGRMPPPRNYPRMGGYKETRPGYRASEGNVPHLPR
NGEQTKQEAGYRAKRTEQTPPRAKSPELEAAHGHGSPGKEEIALENRPPSTDAAQPPPDR
PVEKKSYSRARRTRAKAGDAGKSVDEAPAAEGLAPVAPKPAQAEASPPPAKNSSWESPVE
SSMDGLEQELTQMNLAEQSWAPGQSQFIQPRELRGIPNHMHVGTGPPPQFNRMEEMAVQG
GRVKRYSSQRQRAPVPEPAPPMHISIMEGHYYDPLQFQGPIYTHSENPAPLPPQGMIVQP
EMHLPHPGLHPHQTPAPMANPGLYPPPVSMPPGQPPPQQLLAPTYFSPPGVMNFGNPGYP
YPPGALPPPPPPHLYSNTQAQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPE
DSKSEKSKERSTT
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcctcgcaggacagcgaggacgactcggactcggcc
gcctccgacagcgccgattccgccgccagcgccgcccggtcccggtcccggtcccgttcc
ggatccgcttcccgttccggatccgcttcccgttcccgttccccttcggcctccccgcgg
cctcctcaccgccaagcccggggagccgccggggccctcagcgccgggccgcggggtcga
ggggccgagagcgccgctgggggggcggccaaaagcgagccgcagtctgagtgtgaaagc
gaggacggcatcgaaggagatgccgtgctctcggattacgaaagcgcagaggactcggag
gcagaggaggaggattacagcgaggaagagagcgccaaagtggaattgaagcaggagagc
aacgattcctgcgagtccgcggcgaaagcagagaaaggggacgagaaacccgaggccaaa
ggggctgtgaccggcgagaggcaaagcggggacgggcaggagagcaccgagcccgtggag
aataaagttgggaaaaaagcccccaagcacctggacgatgacgaggaccgcaagaacccg
gcttacatcccgcggaaagggctcttcttcgagcacgacctgcgagggcagacgcaggag
gaggaggtcaggcccaaggggcggcagcggaagctgtggaaggacgagggtcgctgggaa
cacgacaaattccgggaggacgagcaggcccccaaaaccaggcaggagctgatcgcgctc
tacggctacgacatcaggtcggctcacaaccccgacgacatcaaacccaggaggatgcgc
aaacccaggtttgggagccctccccagagagaccccaactggtccggcgagaggccgagc
aagcccccgaggcaccagggtgccgacagcaccacggcttccccgcgcaccttcaccagc
aggagctctgcgggaacggggaggatgcccccccccaggaactacccgaggatggggggc
tacaaagaaacccggccgggctaccgagcctcggagggcaacgtgcctcacctccctcgg
aacggcgagcagacgaagcaggaggccggctaccgggcaaaacgcaccgagcagaccccg
ccgagggccaaatccccggagctggaagcagcccacggccacggcagccccgggaaggag
gagatcgccctggaaaatcgcccccccagcaccgacgccgctcagccacctccagacaga
cccgtcgagaagaaatcttactcccgggcgaggaggaccagagccaaagctggggacgcg
gggaagtcggtggatgaagcccctgctgcggaagggttggcccccgtggccccaaaacct
gcccaagccgaggcgtcccccccgccggccaaaaacagcagctgggagtcaccggtggaa
tccagcatggatggactggagcaggagctgacccaaatgaaccttgccgagcagagctgg
gctccggggcagtcgcagttcatccagccccgggagctgaggggcattcctaaccatatg
cacgtgggaacggggccgccgcctcagtttaacaggatggaggaaatggcggtgcagggc
ggccgcgtcaagcgctactcgtcgcagcggcagagagcgccggtgccagagcctgccccc
cccatgcacatcagcatcatggaagggcactactacgacccactacaattccagggacca
atctacacccacagcgagaacccggccccgctgccgccccaggggatgattgtgcagcca
gaaatgcatctccctcatccaggtttacacccccaccagacgccagccccgatggcaaac
cccggcctttaccctccgccggtctccatgcctccgggccagcccccgccgcagcagctg
cttgcaccgacttacttctccccgcctggagtcatgaattttgggaaccccggctacccc
taccccccgggagcgctgcccccgccgccccctcctcacctttattccaacacgcaggcg
cagtcccaggtgtacggcggggtcacgtactacaacactgtccagcagcaagtgcagccc
aagccttccccgccacgaaggacgtcccagcccgtcaccatcaagccgccgcctcccgag
gacagcaaaagtgaaaaatcaaaggagaggagcaccacgtag
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