Anas acuta (northern pintail): 137846724
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Entry
137846724 CDS
T11380
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aacu Anas acuta (northern pintail)
Brite
KEGG Orthology (KO) [BR:
aacu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aacu03016
]
137846724 (RTCB)
Enzymes [BR:
aacu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
137846724 (RTCB)
Transfer RNA biogenesis [BR:
aacu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
137846724 (RTCB)
Prokaryotic type
tRNA splicing ligases
137846724 (RTCB)
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
137846724
NCBI-ProteinID:
XP_068520947
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Position
1:complement(148838909..148849953)
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AA seq
505 aa
AA seq
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MSRSYNDELQFLDKLDKNCWRIKKGFVPNMHVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
VEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaatgacgagctgcagttcctggacaagctggacaagaactgctgg
cggatcaagaagggcttcgtgcccaacatgcatgtggagggtgttttctacgtgaacgac
cctctggagaagctgatgttcgaggagctgcgcaacgcctgccgcggggggggtgcggga
gggtttttgcccgctatgaagcagatcgggaatgtggcagcgctgccgggcatcgttcat
agatcgatcggcctgccagatgtccattcgggctatgggtttgccattggcaacatggct
gcctttgacatgaacgatcctgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttactgcgcacgaatttggatgaaagtgatgtgcagcctgtgaag
gagcagctcgcccaagctatgtttgaccatattcctgttggtgtcggctccaagggtgtc
atccccatgaatgccaaggatttggaagaggcgctagagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaagaatgctg
caggccgatcccaacaaggtctcctcaagagcaaagaaaaggggtctgcctcagctgggg
accctgggagcaggaaatcattacgccgagatccaggtggtggacgacatttacaacgaa
tacgctgcccggaagatgggcatcgaccacaaagggcaggtgtgcgtcatgatccacagc
ggcagcaggggtttgggccaccaagttgccacagatgcattggtggctatggaaaaagct
atgaaacgggacaaaatcatagtgaacgatcggcaactagcatgcgccaggattgcctct
gtagaaggacaggattacttgaagggaatggcagctgctggaaattatgcgtgggtcaac
cgctcttctatgacttttctaacgaggcaggcctttgccaaagtcttcaacaccacccca
gatgacctcgatatgcacgttatctatgatgtgtctcacaacattgccaaagtggagcaa
cacgtggtggatgggaaggagcggactctgctggtgcacagaaaagggtcaaccagggcc
ttccctcctcaccatcctctcattgctgttgattatcaactgaccggacagcctgttttg
atcggtgggactatgggcacctgtagctacgttcttactggcacggagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtattggacaagctggctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccagagtcttacaagaacgtgacagat
gtggttaacacctgccacgacgctggcatcagcaagaaagccataaaattgagacctatt
gctgttataaaaggctag
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