Anas acuta (northern pintail): 137854023
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Entry
137854023 CDS
T11380
Symbol
PRKN
Name
(RefSeq) E3 ubiquitin-protein ligase parkin isoform X1
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
aacu Anas acuta (northern pintail)
Pathway
aacu04120
Ubiquitin mediated proteolysis
aacu04137
Mitophagy - animal
aacu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
aacu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
137854023 (PRKN)
04120 Ubiquitin mediated proteolysis
137854023 (PRKN)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
137854023 (PRKN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aacu04131
]
137854023 (PRKN)
04121 Ubiquitin system [BR:
aacu04121
]
137854023 (PRKN)
03029 Mitochondrial biogenesis [BR:
aacu03029
]
137854023 (PRKN)
Enzymes [BR:
aacu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
137854023 (PRKN)
Membrane trafficking [BR:
aacu04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
137854023 (PRKN)
Aggrephagy
Other aggrephagy associated proteins
137854023 (PRKN)
Xenophagy
Other xenophagy associated proteins
137854023 (PRKN)
Ubiquitin system [BR:
aacu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
137854023 (PRKN)
Mitochondrial biogenesis [BR:
aacu03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
137854023 (PRKN)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR_1
IBR
Rad60-SLD
Dsc3_N
Rcat_RNF216
Rad60-SLD_2
Motif
Other DBs
NCBI-GeneID:
137854023
NCBI-ProteinID:
XP_068533063
LinkDB
All DBs
Position
3:47158450..47918272
Genome browser
AA seq
464 aa
AA seq
DB search
MIVFVRFNSSHGFPVELRSDASILQLKEVVAQRLAVPADQLRVIFAGKELSNDLTLQNCD
LTQQSIVHIVQSPQKSSQKNDEAENKHAGGILKTLERESESLTRVDLSSSILPSLSAGLA
VILDTTKPSISLPSEKSGAASYNSFYVFCKNFCQAVKPGKLRVRCSVCKQGTLTLARGPS
CWDDVLIPNRITGVCQSQRCNGTIAEFYFKCGAHPTTDSETSVALNLVTTNSRSITCITC
TDIRSPVLVFQCMHRHVICLDCFHLYCVTMLNDRQFIHDLELGYSLPCVAGCPDSLIKEL
HHFRILGEEQYNRYQRYGAEECVLQMGGVLCPTPGCGAGLLPEPGVRKIVCETGNGLGCG
FVFCRECKEEYHEGECSSLLSTQGAMAQKGYVVDEHAARQARWEEASRETIKKTTKPCPN
CHIPVEKNGGCMHMKCPRPQCKFEWCWNCGLEWNRTCMGDHWFD
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atgatagtgtttgttaggttcaactccagccatggcttcccggtggagctaaggtcggat
gccagcatcctccagctgaaggaggtggttgcgcagcgactggcagttccagctgaccag
ctgcgggtgatttttgcagggaaggaactcagcaacgacttgacgctgcagaattgtgac
ctgacccaacagagtatcgttcatattgttcagagtccacagaagagcagtcagaagaat
gatgaagcagaaaataagcatgctggaggcattctaaaaaccttggaaagagaatctgaa
agtctaactcgcgtagatctcagttctagcatcctcccatcactgtctgcagggttggct
gttattctggatactacaaagcccagcatttctcttccctctgaaaagtcaggtgcagct
agttacaacagtttttatgttttctgcaaaaatttctgccaagctgttaaacctgggaaa
ctgagggtccgctgcagtgtatgtaaacaaggaacactgactttggcaaggggcccatct
tgctgggatgatgtactgattccaaacagaataacaggtgtctgccagtcccaaaggtgc
aatgggactattgcggagttttactttaaatgtggagcacacccaacaactgacagtgaa
acatctgtggctttgaacctcgttacaacaaacagtcgctctatcacatgtataacatgc
acagatattaggagtcctgtgcttgtgttccagtgcatgcatcgccatgtcatttgccta
gactgtttccatttgtactgtgtgactatgctgaatgaccgtcaattcatccatgacctg
gagcttggctactccctcccttgtgtagctggctgtccagattccttgattaaagagctt
catcacttcaggattctgggagaagaacagtacaaccgctaccagcgctatggtgcagag
gagtgcgttctgcagatgggcggtgtgctgtgtccaactcccggctgtggagcgggtttg
ctgcctgaaccaggagtgaggaaaattgtatgtgagacaggaaatggactaggctgcggg
tttgtgttctgccgtgaatgtaaagaagaataccatgaaggggaatgtagctctctcctc
agcacacagggagccatggcccagaagggatatgtagttgatgaacatgcagccaggcaa
gcccgatgggaagaggcatctagagaaacgatcaagaaaacaaccaagccatgccccaac
tgtcatattccagtagaaaaaaatggtggctgcatgcacatgaagtgtcctcgacctcag
tgcaaatttgagtggtgctggaactgtggcctggagtggaacagaacctgcatgggcgat
cactggtttgactga
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