Anas acuta (northern pintail): 137854811
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Entry
137854811 CDS
T11380
Symbol
SDC1
Name
(RefSeq) syndecan-1
KO
K06257
syndecan 1
Organism
aacu Anas acuta (northern pintail)
Pathway
aacu04512
ECM-receptor interaction
aacu04514
Cell adhesion molecule (CAM) interaction
aacu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aacu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137854811 (SDC1)
04514 Cell adhesion molecule (CAM) interaction
137854811 (SDC1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
137854811 (SDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
aacu04131
]
137854811 (SDC1)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
aacu04090
]
137854811 (SDC1)
00535 Proteoglycans [BR:
aacu00535
]
137854811 (SDC1)
Membrane trafficking [BR:
aacu04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
137854811 (SDC1)
CD molecules [BR:
aacu04090
]
Proteins
137854811 (SDC1)
Proteoglycans [BR:
aacu00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
137854811 (SDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Syndecan
Glycophorin_A
Motif
Other DBs
NCBI-GeneID:
137854811
NCBI-ProteinID:
XP_068534791
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All DBs
Position
3:complement(108284612..108309954)
Genome browser
AA seq
309 aa
AA seq
DB search
MIGAAAVWLLALCLHAAALPQTTNLNLPPEDLDSSGDDDDGFSGSGAGPLADPSLTWRIP
AEPTNSSLPATPVDFNEQLFPRTESRTEKEVTAPPATSNVLTVEPVVAVKDEVPILGSPD
EKPTNDVVTTERSPTTHFPLVLHVIPSEASDTVHELEPKAPGSDTPDTINILQTDSTIHH
EVGGITAAPTTAPEDVAPTHEEVSEDGSGDPGDFILIKDEDLVPTQNSEVPADSGRNAKA
AGASGIMDRKEVLGGVIAGGLVGLVFAVFLVAFMLYRMKKKDEGSYSLDEPKQSNGGYQK
PHKQEEFYA
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgatcggcgcggcggccgtgtggctgctggcgctctgcctgcacgctgctgccctcccg
caaactacaaatctgaaccttcctcctgaagatctcgattcatctggtgacgacgatgat
ggtttctcaggttcaggtgcaggtcccctggctgacccgtctctcacctggagaatccca
gcagagccgactaactcctcgctgccagcaacaccagtggatttcaatgagcagctgttt
cccagaactgagagccgaactgaaaaggaagtaacagctccccctgcaacaagtaatgtg
ctgacagtggagccagttgtagctgtgaaggatgaagtacccatcctgggctcacccgat
gaaaaaccaacaaacgatgtggttacaacagagagaagccccactactcactttcctttg
gtgcttcatgtaattccttcagaagcctcagacacggtccacgagcttgaacccaaagcc
cctggctctgacacgccagacactataaacatacttcagactgactccaccatccatcac
gaggtgggaggcatcactgctgcccccacgacagctccagaggatgtagctcctacacat
gaggaggtttctgaagatggctccggagacccgggagacttcatcttgattaaagacgag
gatttggtccccacccagaactctgaagtgccggctgactctgggaggaatgccaaagca
gcaggagcctcgggaattatggacaggaaagaagttcttggaggtgttattgctggagga
ctggtaggcttggtgtttgcagtgtttctagttgcatttatgctgtacagaatgaagaaa
aaagacgaaggaagctattcactggacgaaccaaaacagtctaatggaggataccaaaaa
ccacacaaacaagaagaattctatgcataa
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