Anas acuta (northern pintail): 137859391
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Entry
137859391 CDS
T11380
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
aacu Anas acuta (northern pintail)
Pathway
aacu04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
aacu00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137859391 (COL17A1)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF5006
DUF2868
Motif
Other DBs
NCBI-GeneID:
137859391
NCBI-ProteinID:
XP_068544525
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Position
7:complement(25966804..26002793)
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AA seq
1515 aa
AA seq
DB search
MDSVTKKTRQDGSEVTERLITETITTRLTSLPPKGGSSSGLKTSSHTGGSGVEKRSYTHG
SSYVTSSGSGRLNSSSSSGYRQAQSPSSTLTKSPGSTFERKTYVSRHATYEGSSSANSSP
EFPRKEFASASTRGRSQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSASCSPTRSP
SSTLPIPKKAVVETKMVTESSQSVSGTYDTTILNTALPSYNWSSTLPAGSSLGGYHNSMA
QSSSLINAMSHSTGSVFGVPNNLAPTNHALNTGLSTSSTVFGVQNNLSPNSSTLTQNASA
ASTAYGMKNTSQSNTMASTGVSASAGGTVLSSQGDDILRKDCKFLLLEKDNAPAKKEMEL
LIMTKDSGKVFSASNTGLNGGSFAEDTLKKEKQGFSSSYATDTGLKSDANGGLKSVPTRD
KATYAEIRNGDVGGAVGSAPSWCPCGSCCSWWKWLLGLLLAWLLLLGLLFGLIALAEEVR
KLKSRVDDLEKINHSFLAVNRGSPSIAKDVSKVDYLQGVAPSSTFSLENEESVWLMVKSR
LNKEIERGYFRGERGEPGMKGDMGMQGPKGDRGLPGVPGIPGPIGHQGPEGPKGQKGSMG
DPGMEGPMGQRGREGLPGPRGEPGPPGFGEKGDRGAVGEPGPPGPPGPPGSAGLKGLTGS
PGPQGPPGPPGLQGFRGEAGLPGAKGEKGAAGAPGPKGDQGEKGSRGMTGEQGSRGIPGP
PGEPGAKGPPGQAGRDGKPGEKGEPGLMGMPGARGPPGPSGDAGEPGLTGPQGPPGLPGN
PGRPGTKGEPGAPGKVISAEGSSTIALPGPPGPPGPPGPTGPPGVPGPVGPAGLPGQQGP
RGEKGSPGEAVVETIRTEVSSLASQMMADLQGRAGPPGPPGPPGESVQGPPGPRGPPGEG
LPGPPGPPGRPGSSISTSETFLSGPPGPPGPPGPKGDQGEPGPRGFTGEPGEPGLPGIFS
HGGTVTMQGPPGPPGPPGPKGDAGVPGAPGIPGTSRGGSRQIQGPPGPPGPPGPPGPGGS
SSQEIQQYVTDYLKSDNVRHYLTGAQGPPGPPGPPGIITTADGNSLDYAELAARVMSYMT
SSSDRYQSYVSSVSSTSVLYQELLDMLQREEIRQYLIGPQGPPGPPGPGGDGMALSLDYD
ELTRRFISYLSSSGMNIGLPGPPGPPGTPGISYSELTAYLRNSEFSGLVGPQGPPGPPGI
PGSPGASLEDISAYLQNVGYSSMSGVQGPPGPPGPPGPPGFSGTGLLSYADITNSDEFRS
ELIQYLKSDEVRSYISGPPGPPGPRGPPGPKGDSGLVAGSLASVYGESLSSERLHGGSLG
AEGSHGASLGAGSSYSSSMSSMSSYSASMGSEGSYGASRGGDGSFDDLLAAEEAHRRSAG
SGRSYSNSFSGSLDYNELARHVSENLQSRGILQDLMSYTGQGPPGPPGPPGPPGISRVFA
AYGNVTEDLMDFFRAHGTVQGPPGEKGERGYPGPKGDPGPMGPPGRHGQRGPKGEKGEKG
EQVYVGRRKRRSVGV
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtaacaaagaaaacgaggcaagatggttcagaagttacagaaagacttatt
acagagacaataacgacaaggctgacttccttaccacccaaaggagggagcagcagtggg
ctcaaaacatcatcccacactggagggagtggagtggaaaagaggtcttacacccatggc
agcagctatgtgacttcaagtggaagtggtagactgaattcatcatcgtcatctggctac
agacaagcccagtctcccagctcaactctcaccaaatcacctggttcaacgtttgaaaga
aaaacttatgtcagccgccatgcaacgtatgaagggagctccagtgctaactcttctcca
gagttccccagaaaagagtttgcatctgcttccacacgagggagaagccaaagtcgagag
agtgaaatacgagtccggcttcagagtgcatctccctctggcagatggacagagctggat
gatgtaaaacgtttgctgaaaggaagtcgatcagccagctgcagccctactcgctcacca
tcaagtaccctcccaataccgaaaaaagctgtggtggagacaaagatggttaccgagagc
tctcagtcagtgtcggggacatatgatacaaccatactgaatactgccctcccttcatac
aactggtcctcaactctgcctgctgggtcttcccttggcggataccacaacagcatggcc
cagagctcgtccttgatcaatgctatgtctcactctacaggatcagtttttggtgttcca
aataacctggctcccaccaatcatgctctgaacacaggcctgagcacttcctcaacagtg
tttggagttcaaaacaacctgtcaccaaactcttcaaccctgacccagaatgcctctgca
gcctccacagcatatgggatgaagaacacttctcagagcaacaccatggctagtactggt
gtgtctgcctcagcaggaggaactgttttgagctcccagggggatgacattctgcgcaaa
gactgcaagttcctgctgctggagaaggacaatgccccagcaaagaaggagatggagctc
ttgatcatgacaaaggatagtggcaaagtctttagtgcctcgaacaccgggcttaatgga
ggatcctttgcagaagacacactgaagaaagagaagcaaggattttcttcttcttacgct
acagatacgggcctcaaatcagatgcaaatggaggactgaaatcggtaccaacaagggac
aaagcaacatatgcggaaatacgaaatggcgatgtggggggtgcagttggatcagcacca
tcttggtgtccctgtggttcctgctgtagctggtggaaatggctcctgggtttgcttctg
gcctggttgcttcttctcgggttactctttggactcattgctctggcggaagaagtgaga
aagctgaaatctcgcgtggatgacctggaaaaaatcaatcacagcttcctggcagttaac
cgcgggagtccaagcatagcaaaagacgtttcaaaagtagactatcttcaaggtgtggca
ccctcttcaacattctctcttgaaaatgaagaatcagtttggttgatggtgaagagcaga
ctgaacaaggaaatagaacgaggctacttccgaggggagagaggagaacctggtatgaaa
ggtgacatgggaatgcagggtcctaaaggagatcgaggacttcctggtgtcccaggcatt
cctggtccaattgggcaccaagggccagaaggaccaaagggacagaaagggagcatgggt
gatcctggtatggagggtcccatgggacaaagaggtcgagaagggttaccaggacctcga
ggagagcctggaccacctggatttggagaaaaaggagacagaggtgctgttggtgagcca
ggtcctccagggccacctggtcccccaggttctgctggccttaaaggtctgacgggttct
ccaggaccccaaggccctccaggtcctcctggcctacaaggatttagaggagaagcaggt
ctcccaggtgctaaaggtgagaaaggagctgctggagcccctggacccaaaggtgaccag
ggtgagaagggttctcgtggaatgacaggtgaacaaggctcaagaggtatacctggtcct
ccaggagagccaggggccaaaggaccaccaggacaagctggccgtgatgggaagccaggt
gaaaaaggtgaaccgggtcttatgggaatgccaggagcccgaggccctccaggaccttct
ggagatgcaggagagccaggtctcacaggaccccaaggacctccaggacttccagggaac
cccggcagaccagggactaaaggagaacctggagctccaggcaaagtcatcagtgctgag
ggttcatcgactattgctctcccaggccccccaggcccacctggcccacctggccccact
ggaccccctggtgttccaggtcctgttgggccagctggtctccctggacagcaaggtcca
cggggtgagaagggatccccgggtgaagctgtggtagaaactatcaggacggaagtctca
tcactggcatctcagatgatggcagatttacaagggcgagcaggaccaccaggtccccct
ggaccaccaggtgaatctgtgcagggaccccccggacctcgtggcccaccaggagaggga
ttgccaggacctccaggcccaccagggagaccaggatcttctatatccacctcagaaaca
ttcctctcaggcccaccgggtccaccaggtccaccaggcccgaagggagaccaaggcgaa
ccaggtccacgaggattcacaggagaaccgggtgaacctggccttccaggaatcttctcc
catggtggtacagtcaccatgcagggacctccaggcccaccaggtccaccaggacccaaa
ggtgatgcaggtgtcccaggcgctcctggcatcccaggaacatctcgaggtggatccaga
caaattcaaggacccccaggtcctcccggcccacccggtcctcctggcccaggtggaagt
tcatctcaagagatccagcagtatgtcactgactacctgaaaagtgacaatgtaaggcat
tatttgaccggtgcccaaggcccaccaggccctccaggcccacccgggatcatcaccact
gcagatgggaatagcttggattatgcggagctggctgcgcgggttatgagctatatgaca
agctcttcagatcgttatcagtcatatgtcagttcagtgtcatctacatcagttttgtat
caagaacttttggacatgctgcagagagaagagattcgtcagtatctgattggaccccag
ggcccaccagggcctcctggaccaggaggagatggaatggctctgtcactggattatgat
gagttgaccaggcggtttatcagctatttgtcaagttctgggatgaacatcgggctccct
ggaccacctgggcctccggggacacctggcatatcgtacagtgagctaacagcatacctg
cgaaactctgaattcagtggtctcgttggtccccaagggcctccagggcctccagggatc
cctggatcacccggcgcctctctggaggacatctctgcttacctacaaaatgtgggatac
tcttccatgtccggagtgcagggcccacctggcccgccgggccctccagggccaccaggc
ttctcgggaaccgggctcctgtcctacgcagacatcaccaacagcgacgagttccggagc
gagctgatccagtacctgaagagtgatgaagttcgaagctacatctcggggccgcccggg
ccccctgggccgcggggaccaccaggacccaaaggagacagcggtttggtagctgggtct
ctggcatcagtgtatggcgagtcgctgtcttctgagcggttgcacggaggatcccttggt
gctgagggctcccacggggcatcgctgggcgcaggcagctcttacagcagctccatgagc
agcatgtcatcctacagtgcctccatgggcagcgagggctcctacggtgcctccaggggt
ggtgatggctcttttgatgacttgctggcagctgaggaggcccacaggagatcagcaggt
tccggcagatcctacagcaactccttctctgggtccctggattacaacgagctggcgcgc
cacgtgtcagagaacctgcagagccgaggtatcctgcaggacctgatgtcttacactgga
caggggccaccaggtcccccaggtcctcctggtccccctggaatcagcagggtctttgca
gcctatggcaatgtcaccgaggaccttatggacttcttcagagcacatggaactgtccag
gggcctcctggtgagaagggcgagcggggttaccccggacccaaaggtgaccccggaccg
atgggcccaccgggacgccatgggcaaaggggacccaaaggagagaaaggcgagaaaggt
gaacaagtgtatgttggcagaagaaaaagaagaagcgttggggtttaa
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