Anas acuta (northern pintail): 137860852
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Entry
137860852 CDS
T11380
Symbol
COL4A4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aacu Anas acuta (northern pintail)
Pathway
aacu04382
Cornified envelope formation
aacu04510
Focal adhesion
aacu04512
ECM-receptor interaction
aacu04518
Integrin signaling
aacu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aacu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
137860852 (COL4A4)
04518 Integrin signaling
137860852 (COL4A4)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
137860852 (COL4A4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
137860852 (COL4A4)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
137860852 (COL4A4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aacu04147
]
137860852 (COL4A4)
00536 Glycosaminoglycan binding proteins [BR:
aacu00536
]
137860852 (COL4A4)
Exosome [BR:
aacu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
137860852 (COL4A4)
Glycosaminoglycan binding proteins [BR:
aacu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
137860852 (COL4A4)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
137860852
NCBI-ProteinID:
XP_068547683
LinkDB
All DBs
Position
9
Genome browser
AA seq
1678 aa
AA seq
DB search
MALPKDSFEQIKWLIRAAWWLLIVFSAQEIDGGGYAYIDPCGGQDCSVCRCFPEKGSRGQ
PGELGPQGPIGSLGSTGPAGLPGEKGQRGENGQPGPAGEKGDKGPTGVPGFPGLDGVPGL
PGSEGPRGKRGVDGCNGSRGDPGFPGENGYIGPRGPCGNPGQKGEKGNSVFVSHFGKGPP
GERGDPGPPGIPGPRGSRGSTGPPGYPGQPGLPGIPGYPGLPGEQGNPGIGVDGQKGEPG
DVGLPGPPGSPLLVGPPGAQLFKGEKGQKGLPGITGYRGPRGPKGILGRGEKGEKGIAGF
PGLRGSPGSYGPAGFPGIKGETGTAGFPGQPGYPGIKGDPGEKGPPGPPGAVGTPLLPMK
GPQGDPGFPGPAGDVGSVGPSGPAGALGRPGDDGASLPGLPGLSGAPGPQGFHGDPGLPG
TGEPLPGRPGYPGPPGLPGQPGRQGLPGLPSVICTDRGIPGEPGAKGQIGLPGRKGEKGE
KGNQGLCSCSAGPPGPRGIQGPPGTQGRKGQMGYPGRHGEKGDPGLSGAMGSPGLPGTPG
SAGQHGEKGEKGDLGRVRIKGIKGERGPTGVPGFPGQRGNDGRDGDLGLPGEKGAEGDSG
IPVPGDKGIPGVPGLPGVKGPIGLPGLGIPGPPGVRGTPGDFGDTGSVGPPGLKGQKGET
VCIVSPSPGNPGPPGFKGVQGPKGLKGLPGRPGPNGFDGQKGQRGRPGAGIPGPEGFRGK
AGDPGEEGERGSTINGKNGAPGPPGPDGQKGVPGDTTYGPPGIPGNRGLPGPPGAQGARG
DPGIPGLQGQPGTPGFPGAKGFRGPEGDIGAPGCPGFPGPLCDMGLPGPPGLRGVIGLPG
PQGLPGFKGQKGDRGLAGPPGIKGLKGSPGSRGPPGPPGSRGLPGLPGDNGPPGFPGQTG
SKGIQGPQGFLGLPGTQGPMGISGVKGEEGKMGPSGPSGECGDMGMKGERGPPGDSGSIN
IRLEKGQKGEPGFPGENGFRGERGEKGNTGFRGAPGFPGKSGVPGLPGDHGDTGLMGFPG
LQGFPGPKGFKGMTGFQGQPGDQGDVGLPGMPGNPGLTGPKGSKGKRGDPTLLLGIRGQK
GPPGDPGLTGFCGLPGEKGSAGIQGQPGRLGSKGESGYPGIPGFPGAPGPPGLPGEPGEK
GKQGLLGPPGLRGLAGSQGRKGLPGLPGLDGLDGLKGQKGSAGAPGQSETGRPGYSGELG
PKGDRGEPGWPGISIPGAPGERGFPGFPGIRGPVGPAGPMGRSPSSAPPGLPGDQGPPGL
DGIRGQPGPPGPPGETIFVQGDPGDIGIQGAPGISGQRGQQGARGPPGNQGREGPKGPMG
IHGPQGPPGAVGHPGDQGFQGKPGPKGPTGDPGEPGRIDDSCPTIPGPPGEAGQRGDDGS
IGLSGPIGHPGPQGRKGEEGSCGLPGQDGLPGAPGPPGDQGHVGEQGYTGPQGPPGQTGI
PGPPGPHVRSSSGFLLVLHSQSDREPLCPQGMPKLWTGYSLLYLEGQEKAHNQDLGLAGS
CLPVFNTMPFAYCNINQVCYYASRNDKSYWLSSAAPLPMMPLSEEEIEPYISRCAVCEAP
AQAVAVHSQDQSIPPCPMNWRSLWIGYSFLMHTGSGDQGGGQSLMSPGSCLEDFRSAPFI
ECQGQRGTCQFFANEYSFWLTTVMPELQFASAPLSGTLKEGQEQRKKISRCQVCLKHG
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggcattaccaaaggattcgtttgaacagattaagtggcttatcagagctgcctggtgg
ctgctgattgttttttcagcacaggaaattgatgggggaggatacgcatatattgaccca
tgtgggggacaggattgttcagtttgtcggtgctttccagaaaaaggatcaagaggtcag
cctggtgagttgggacctcaaggtccaattggatccttgggatctacaggaccagccggt
ctgccaggggaaaaaggacagagaggtgagaatgggcagcctgggccagctggagaaaaa
ggtgataagggcccaactggagtcccaggatttcctggtctagatggtgttcctggatta
ccaggaagtgaaggacccaggggcaaacgtggtgtagatggctgcaatggctcaagaggc
gatccaggatttccaggcgaaaatggatatattggacctagaggtccttgtggaaatcca
gggcaaaaaggagaaaaaggaaattcagtgtttgtatcacattttggaaaaggaccccca
ggagagaggggtgatcctggaccccctggcattcctggtcctagagggtcaagaggttca
acaggcccacctggatacccaggccaaccaggcttgcctggtattccaggttaccctggt
ttgccaggtgaacagggaaatccaggtattggagtagatggacaaaagggggagccgggc
gatgttggacttcctggaccacctgggtcaccattgttagttggacctcctggagctcag
ctgtttaaaggagaaaagggccaaaaaggactacccggaataacaggataccgaggacca
cgtggacccaaaggcatacttgggagaggagaaaagggtgaaaaaggcattgctggattc
cccggattgcggggtagtcctggttcttacggacctgcaggctttcctggaataaaggga
gaaacaggaactgctggttttcctgggcaacctggctatccaggcataaagggggatcct
ggagaaaaagggcccccaggtcctcctggagctgttggaactccattgcttcccatgaaa
ggtccacaaggagatcctggatttccaggtcctgctggtgatgtggggtcagttgggcca
tctggtcctgcaggcgcactggggagaccaggagatgatggagcaagtctgcctggcctg
ccaggactaagtggggcaccaggacctcaaggtttccatggtgatcctggtttgccagga
acaggtgaaccacttccaggaagacctggatatcctggaccaccaggactaccgggacag
ccaggaaggcaagggttacctggactacctagtgtaatttgtactgacagagggatccct
ggggaacctggagcaaaaggtcagataggccttccaggaagaaaaggtgaaaaaggagaa
aaaggaaaccaaggcctctgctcatgtagtgctggtcctcctggtccccgtggtatacaa
ggacctccgggtactcaaggaaggaaaggacaaatgggttaccctggaagacacggagaa
aagggtgatccaggcttatctggtgcaatgggatcaccagggctccctgggacacctggt
tctgctggacaacatggtgaaaaaggagaaaagggtgacctaggaagagttagaataaaa
ggaataaaaggtgaaagaggtcctactggggttccaggatttccaggccaaagaggtaat
gacggcagagatggggatttaggattgcctggggagaaaggagctgagggtgattctgga
ataccagtgccaggtgataaaggaatccctggagtcccaggactccctggagtaaaagga
ccaataggattgccaggtttggggattcctggccctcctggagtcagaggtacccctgga
gactttggtgatactggtagcgttgggccacctggtctaaagggtcagaaaggtgagact
gtctgtattgtatcaccatcccctggaaacccaggtcccccaggttttaaaggtgttcaa
ggaccaaagggtttaaaaggactgcctggtcgtcctggaccaaatggctttgatgggcaa
aaaggccagcgaggcagaccaggagctggaatccctgggccagaaggcttccgaggcaaa
gctggtgatcctggtgaggaaggtgaaagaggatccaccattaatggtaaaaatggtgct
ccaggtccacctggcccagacggtcagaaaggtgttccaggtgatactacatatggtcct
ccaggaatcccaggcaataggggactgccaggaccacctggtgcacaaggagcaaggggt
gatccaggcattcctgggcttcaagggcagcctggtactccaggatttccaggtgctaaa
ggttttagaggcccagaaggcgatataggagcacccggctgtccaggcttccctggtcca
ctgtgtgacatgggattaccagggccaccaggactcagaggtgtcataggcctgccaggc
cctcaaggcttaccaggctttaaaggtcagaagggagataggggcctagctgggccacct
ggaatcaaaggtctcaagggctctcctggctcacggggccccccaggtcctccaggctcc
cgaggacttccaggacttccaggtgataatggaccacctggcttcccaggacaaacagga
agcaaagggatccaaggaccccaaggattcctaggactcccaggaacacaaggcccaatg
ggaatctctggtgttaaaggtgaagaaggaaaaatgggtccatctgggcctagtggagaa
tgtggggatatgggaatgaaaggtgaaagaggacctccaggagacagtggctccattaac
attcggcttgagaaaggacaaaagggagagccaggctttcctggtgagaatggatttaga
ggtgaaagaggtgaaaaaggcaatactggtttcagaggtgccccaggatttccagggaag
agtggtgtcccaggactgccaggtgaccatggtgacactggactgatggggtttccagga
ttacagggtttcccaggaccaaagggcttcaaaggaatgacagggttccaaggacaacca
ggtgaccagggtgatgtcggcttaccaggaatgcctggaaacccaggactgactggccca
aaaggatctaaaggcaagagaggtgacccaactcttctgcttggtatacgtggtcaaaaa
gggcctcctggagacccaggattaacaggattctgtgggttacctggagagaagggttca
gcaggtatccaaggacaacctggaagactaggatccaagggcgagtctggatacccagga
atacctggatttccaggagctccaggtcctccaggattgccaggagaacctggagaaaaa
gggaaacaaggacttttgggacctccaggattgcgaggattagctggatcgcagggcagg
aaaggtcttcctggactgcctggactggatggcttggatggactaaaaggtcaaaaaggt
tctgcaggagctccaggtcaaagtgaaacagggcgcccaggatactcaggagaacttgga
ccgaaaggtgacagaggtgaacctggatggcccggtatttccattccaggcgcccctgga
gaaaggggatttccaggattcccaggtataagagggcctgttggacctgctggacctatg
ggaagatctcccagtagtgcccctcccggtcttccaggggatcaaggaccacctggttta
gatggcatcagaggtcagcctggtcctcctggtcctcctggagaaaccatctttgtgcaa
ggagatccaggcgacattggtattcaaggggcaccaggcatttctgggcagcgagggcaa
caaggagccagaggtcctccagggaaccaaggacgagaaggcccaaagggtcctatggga
atccatggcccacagggtccacctggtgctgtaggacacccaggagaccaaggttttcaa
gggaaacctggtcctaaaggtcccacaggtgaccctggtgaaccaggaagaatagatgac
tcatgccctacaattccaggacctcccggggaagcgggacaaagaggagatgatggctct
ataggattatcagggccaataggtcatcctggaccccaaggaagaaaaggtgaagaaggg
tcctgtggactgccaggtcaagatggtttacctggggcacctggaccaccaggtgaccaa
gggcatgtaggagagcaaggatacactggaccgcaaggtccacctggccagactggtatc
ccaggaccaccaggccctcatgttagatcttcaagtggattcttgcttgtccttcacagt
cagtcagacagagaaccactctgtccacagggaatgccaaagttatggacaggttatagc
ctgctgtacctggaaggacaagaaaaagctcacaatcaagatcttggtctagcaggatct
tgtcttcctgtatttaatactatgcccttcgcctactgtaatatcaaccaagtttgttac
tatgccagccgaaatgataagtcttactggttgtcaagtgctgctcctttaccaatgatg
ccactctctgaagaagaaatagaaccctacataagcaggtgtgctgtgtgtgaggcccca
gcccaagcagtagcagttcacagccaagatcagtcaattcctccctgccccatgaactgg
agaagtctttggataggatactcttttttgatgcacactggatcgggtgatcagggtggt
ggacagtcccttatgtcacctggaagttgcttagaagacttcagatcagcaccattcatt
gaatgccagggtcagcggggaacttgtcagttttttgctaatgagtacagtttttggcta
acaacagtgatgcctgaactgcagtttgcatcagcccccttgtcaggaactcttaaagag
ggacaagagcagaggaaaaaaatcagtagatgtcaagtctgcctgaagcatggttaa
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