Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1: TC41_0162
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Entry
TC41_0162 CDS
T01821
Symbol
holB
Name
(GenBank) DNA polymerase III gamma/tau subunits-like protein
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
aad
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
Pathway
aad03030
DNA replication
aad03430
Mismatch repair
aad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TC41_0162 (holB)
03430 Mismatch repair
TC41_0162 (holB)
03440 Homologous recombination
TC41_0162 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aad03032
]
TC41_0162 (holB)
03400 DNA repair and recombination proteins [BR:
aad03400
]
TC41_0162 (holB)
Enzymes [BR:
aad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TC41_0162 (holB)
DNA replication proteins [BR:
aad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TC41_0162 (holB)
DNA repair and recombination proteins [BR:
aad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TC41_0162 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DUF4127
Motif
Other DBs
NCBI-ProteinID:
AEJ42140
UniProt:
F8IIY9
LinkDB
All DBs
Position
161586..162545
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AA seq
319 aa
AA seq
DB search
MGKAVDGLEAFKANGCLDEAVGLPEVLVRRLRSGQLWHAVLLVGEPSQAERVSRWLAQAL
LCEAPRADAPCGRCRSCAQFSAGSHPDFWASGEEGLKAGDVEALQAWLATKGHGTRKVYV
LHGADEMTPVAANRMLKTLEEPAPETYAILTAKSRQRVLSTLRSRSFTCLLSASPPFLST
DPTSISVVARAASAEDPSFAGLMERVIEWTETWLTGGASPWEMAASWQSMTKDVPAEDGL
LLLAEWLRELMRVRAGGQAERFAEWQEVARRIAPILEVEQYAACVQAVMEARLRLQSHVA
WLLNLEQMCVRLREVTTSW
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
ttgggaaaggcggtcgacggcttggaagcgttcaaagcgaatggctgcctggatgaggcg
gtcgggctgccggaggtcctcgtgaggcggcttcgctcaggtcagctctggcacgcggtg
ctcttggtgggcgagccgagccaggccgagagggtgtcgaggtggctcgcccaagcgctg
ctctgcgaagcgccgcgggcggatgcgccgtgcgggcggtgccgaagttgcgcgcagttt
tcggccggatcgcaccccgacttttgggcttcgggagaagaagggctcaaggcgggcgac
gtggaggcgctgcaagcgtggcttgcgaccaaaggccatgggacgcgcaaggtgtacgtt
ctccacggcgccgatgaaatgacccccgtcgcggccaaccgcatgctcaagaccctcgag
gagcccgcgccggagacgtacgcgattctgaccgcgaagagccgtcaaagagtgctgtcc
acgcttcgatcccgctcgttcacctgcctcctttctgcctcgcctccttttctctccacg
gatccgacgtccatctcggtcgtggcgcgcgccgcaagtgcggaagatccttcgtttgcc
gggctcatggaacgggtgatagaatggacggagacgtggctcaccggtggcgcgtcgccc
tgggagatggccgcgtcttggcagtcgatgacaaaggatgtccccgcggaagacggcctc
ttgctcctcgccgagtggctccgcgagctcatgcgggttcgcgcaggtggccaggcggag
cggtttgcggagtggcaagaggtcgcgaggcgcatcgctcccattctcgaggtggagcag
tatgcggcgtgtgttcaggcggtgatggaagcgagactgcgccttcagtcgcacgtcgct
tggctgctcaaccttgagcagatgtgcgtccgtttgcgggaggttacaacctcatggtga
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