Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1: TC41_1314
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Entry
TC41_1314 CDS
T01821
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
aad
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
Brite
KEGG Orthology (KO) [BR:
aad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aad03032
]
TC41_1314 (topA)
03400 DNA repair and recombination proteins [BR:
aad03400
]
TC41_1314 (topA)
Enzymes [BR:
aad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TC41_1314 (topA)
DNA replication proteins [BR:
aad03032
]
Prokaryotic type
DNA Topoisomerases
TC41_1314 (topA)
DNA repair and recombination proteins [BR:
aad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TC41_1314 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Zn_ribbon_recom
Zn_ribbon_RPB9
Auto_anti-p27
Zn_ribbon_3
Toprim_4
DNA_ligase_ZBD
Ribosomal_S27e
HVO_2753_ZBP
Motif
Other DBs
NCBI-ProteinID:
AEJ43253
UniProt:
F8IHW3
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All DBs
Position
1299993..1302083
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AA seq
696 aa
AA seq
DB search
MSDYLVIVESPAKAKTIGKYLGSKYTVKASMGHVRDLPKSQLGVDVEHGFEPKYITIRGK
GDVIKALREASKKAKKVYLAADPDREGEAIAWHLQHLLDLNPDDDCRVVFHEITKDAVKQ
AFQHPRKINLDLVNAQQTRRILDRLVGYKLSPLLWRKVKKGLSAGRVQSVALRLIVDREN
EIRAFQPEEYWTVDAHGQVHGKKLVARFHGYGEEKTPLPNEEAVRELLARVEGHSLVVRR
VRKSERKRNPAAPFTTSSLQQEAARKLGFRAYKTMQIAQQLYEGLDVPGEGTVGLITYMR
TDSTRIAQSAQEEARAYIRQSFGEDYVPDRPRQYAKNEDAQDAHEAIRPTSVMRHPDRLK
DHLSRDQYRLYKLIWERFVASQMESAILDTTSVDLEANGAWFRATGSVVRFPGFMALYTE
GRDDESEEEEGKLLPPLEEGDVVQVKTWKPEQHFTQPPPRYTESSLVKAMEELGIGRPST
YAPTIDILLKRGYVTLDQKRFVPTELGEIVVNILKEHFPQLIDVSFTADMESRLDKVEEG
HANWIELLDQFYHDFEKDLKKAESALGHVELKEEVSDVRCEKCGRLMVYKTGKYGKFLAC
PGFPECRNTKPVLKEISVSCPKCGKPLVERRGKSRKVFYGCSGYPECDYVLWQRPTGQVC
PVCGHPMVEKGGKGKTVVVCSNEKAHPMVATEAQAK
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
gtgtcagactatctggtcatcgtcgagtcgcctgccaaggcgaagacgattgggaagtat
ctggggagcaagtacacagtgaaagcctccatgggccacgtgcgagacttgcccaagagc
caactcggcgtcgacgtggaacatggtttcgaaccgaaatatattaccatccgcgggaag
ggcgatgtcatcaaggcgctccgcgaggcgagtaagaaggcgaaaaaggtctatctcgcg
gcggaccctgatcgcgaaggggaagccatcgcttggcacctgcaacatctgctcgatctc
aatcctgacgatgactgtcgcgtcgtgtttcacgagatcacgaaggacgcagtcaaacag
gcgtttcaacatccgaggaagatcaacctggatctcgtgaacgcgcaacaaacgcggcgc
attctggatcgtcttgtaggctacaagctgagtccgttgctgtggcgaaaggtgaaaaag
ggcctctcggcaggccgcgtgcagtcagtggcgctgaggctcattgtcgaccgcgaaaac
gaaattcgagcgtttcagcctgaggaatactggactgtcgacgcccacggccaagtacac
ggaaagaagctcgtcgctcgctttcatggttatggtgaggaaaagacaccgcttccgaac
gaagaggccgtgcgcgaactgttggcccgtgtggaaggccattcactggtcgtgcgtcgg
gtcaggaaatccgaacggaagcgaaatcccgctgcgccgttcacgacgagcagtctccaa
caagaggcggcacgaaaactcgggttccgagcgtacaagaccatgcaaattgcgcagcag
ttatacgaagggctggatgtgccgggcgaaggcacggtcggtctcatcacctacatgcga
acggattcgacgcgcatcgcgcaatccgcgcaggaagaagcgagagcttatattcggcaa
tcgtttggcgaggattacgtgccggatcggccgcggcaatatgcaaaaaacgaagacgca
caagacgcgcacgaggcgattcgccccacgtcagtgatgcggcatccggaccggctgaag
gatcacctgtcgcgcgatcagtatcgcctgtacaagctcatctgggaacgattcgtcgcg
agtcagatggagtcggccattctcgacacaacgtcggtcgatctcgaggcaaacggtgcg
tggtttcgcgcgaccggttccgtcgtccggtttcctggattcatggcgctttacaccgag
gggcgcgacgacgagagcgaagaagaggaagggaaactgctccctcccctcgaagagggt
gatgtggtccaggtgaagacctggaaacccgagcagcattttacgcagccgccgccgcgc
tacacggagtcgtcgctcgtcaaagccatggaagaactggggattggtcggccgagcacg
tacgcgccgaccatcgacatcctgttgaagcgcgggtacgtaacgcttgatcaaaagcga
tttgtcccaacggaactcggggaaattgtggtgaacatcctgaaggaacactttccccaa
ctcatcgacgtgtccttcaccgccgacatggaaagtcgactagacaaggtcgaggagggt
catgcgaactggatcgagctgctcgatcagttttatcatgactttgagaaggatttaaag
aaggcggaaagcgcactggggcacgtggaattgaaggaagaggtttcggacgtgcggtgt
gaaaagtgcggccgcctgatggtctacaaaacgggcaagtatgggaagtttctcgcgtgt
ccaggtttccccgagtgtcgaaacaccaagccggtgctgaaagaaatttcggtctcctgc
ccaaagtgcgggaaaccgcttgtggaacgtcgaggcaagtcgagaaaagtgttctacggc
tgcagcgggtatcccgagtgtgattacgtgctttggcagcgcccaacgggtcaggtgtgc
ccggtctgcgggcatccgatggtcgaaaagggcgggaagggaaagaccgtggtggtgtgc
agcaacgaaaaggctcatccaatggtggcgaccgaggcacaggcaaaatga
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