Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1: TC41_1366
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Entry
TC41_1366 CDS
T01821
Symbol
polC
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
aad
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
Pathway
aad03030
DNA replication
aad03430
Mismatch repair
aad03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
aad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TC41_1366 (polC)
03430 Mismatch repair
TC41_1366 (polC)
03440 Homologous recombination
TC41_1366 (polC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aad03032
]
TC41_1366 (polC)
03400 DNA repair and recombination proteins [BR:
aad03400
]
TC41_1366 (polC)
Enzymes [BR:
aad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TC41_1366 (polC)
DNA replication proteins [BR:
aad03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TC41_1366 (polC)
DNA repair and recombination proteins [BR:
aad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TC41_1366 (polC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
tRNA_anti-codon
RNase_H_2
Rv2179c-like
DNA_pol_A_exo1
DEDDh_C
tRNA_anti_2
DNA_pol3_a_NII
Zn-ribbon_8
YhfH
Motif
Other DBs
NCBI-ProteinID:
AEJ43303
UniProt:
F8IIH1
LinkDB
All DBs
Position
1340583..1344905
Genome browser
AA seq
1440 aa
AA seq
DB search
MAITEHAVRERALARVRSVRVRRATREIRVNVESPFGTLGPEADAFSSFYRDLAEIHELC
ASAFGTSCAWSIEVMSADVVSTREAECAMRALAAAYEERSHVSGKWLSQARLTVEAVDEP
ARFRASIRVPSQPIADQLKQKGVAEWLTSEARRAFGLHVTVLVEVDETACEDLLAAGEKL
KQEAEARWWRQLAEEAKSAKDQPKESEGRSDTGAAQGVEPLVVGQMYEEPTPIPLRDIAD
EMRRATVVGEVFGVERRTLASGRTLIQFAITDHTDSISAKMFVQSERDLQATSHLADGVW
VKIQGQVQFDPYAKELVFMVQSMRPQDAPRRADTAEVKRIELHAHTTMSALDGVVSAAAL
VKRAAEWGHDAIAITDHGVCQAYPEAYQAAKKHGVRLVLGVEAYVVDDGGLLVYRECDRP
LDDETEYVVFDTETTGLNAREDTLIEIAAVKVKAGHIVDTYATLIDPERPLDPKIVELTG
ITNEMVVGQPKLKEALDGFRQFARGAVLVAHNAEFDVGFLNQCAERLGLDPWEEPVIDTL
ALARVLYPGEKNYKLKTLTQKFSVELVNHHRALADSEATAKVFVRMLQDAKARGIHNLLD
MNHLRGQIDISRVRPFHATVLVRNREGLRNLYRLVSIAHTQYLHRVPRIPKSALARHREG
LLIGTACRQGELIEAFFRGKSEDEIDTLLEFYDYLEIQPISHYEPLVREGVVASFEQVRE
LLRNIVEIGKRLNKPVVATGDVHYLDEHDAIFREIFLQSQKLDTKQPPLHFRTTDEMLEE
FAFLGEEDARAVVIDNPRRLVALCDDVKPIPDELHTPVIEGAEEEIRRLAYDKAKRIYGD
PLPELVEKRLERELNAIISHGYAVIYLIAHKLVTKSLSDGYLVGSRGSVGSSLVATMTDI
TEVNPLPPHYVCLSCHYHEFFLQGEYGSGFDLPDKACPNCGAKLHKDGQDIPFETFMGFD
GDKVPDIDLNFSGEYQPRAHRYTEELFGKDHVFRAGTISVVAEKTAYGYVRKFAEERGLV
LRNAEIERLVRGCTGVKRTTGQHPGGQVVVPHYVEIYDFTPIQYPADDTSSETLTTHFDY
HSGLENCLLKLDILGHDDPTVIRMLQDLTGVDPKSIPLDDPDVLELFRSTRPLGVTPEEI
RSTTGTYAIPEFGTRFVRQMLEDTRPTTFSELVRISGLSHGTDVWLNNAQTLIRDKIATL
SEVICARDDIMLYLIQKGLDPARAFKIMEGIRKGKGVKPEDEVYMREHGVPEWYIESGKK
IKYMFPKAHAAAYVLMAVRIAWFKVHRPLAFYATYFTVRADDFDVAVMTAGREAILKKIE
EIEAKGNVASAKEKSFLTVLEVALEMVARGYRFLPIDLYKSHATQFLIEEEAQGLRPPFA
AIPGIGETAARNLYEAAQQGEFLSLEDLQSRARASRAVIDVLMELGCLDGLPETNQLSLF
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atggccatcaccgaacacgccgtccgggagcgggcgctcgctagggttcgaagcgtccgc
gtgcgtcgggcgacccgggagatccgcgtcaacgtggagtcacccttcggcaccttgggg
cctgaggcagacgcgttctcttccttctatcgcgatctcgccgagatccacgagctgtgc
gcctcggcgtttgggacgtcctgcgcatggagcatcgaagtcatgtctgccgacgtcgta
tccacacgggaggcggaatgcgcaatgcgcgctcttgccgctgcctatgaggagcggtct
cacgtttcgggcaaatggctgtcgcaggcgagactgaccgtggaggctgtggacgagccc
gcgcggtttcgcgccagcatccgcgtcccgagccaaccgattgcggatcagctcaagcag
aaaggtgttgcggagtggctcacctcggaggctcgtcgcgcgtttggccttcatgtgacg
gtcctcgtcgaggtggatgagacggcttgtgaagacctcctcgcggcgggcgagaaactg
aagcaggaggccgaggcgcgttggtggcgccagcttgccgaagaggcgaaatcagcgaaa
gaccagcccaaggagtcggaagggcggagtgacaccggcgctgcgcagggcgtggagccg
cttgtcgtcggccagatgtacgaggagcccacacccatcccattgcgggacatcgccgat
gagatgcggcgtgccaccgtggtgggcgaggtcttcggcgtagaacgcaggacgctggcg
agcgggcgcacgctcattcaatttgccatcacggatcacacggactccatctcggccaag
atgttcgtgcagtcggagcgagatctgcaggccacgtctcatctcgcggatggcgtgtgg
gtgaaaattcagggtcaggtgcagttcgatccgtatgccaaggaactcgtgtttatggtc
cagtcgatgcgccctcaggatgcgcctcggcgggcggatacggcggaggtgaagaggatt
gagctgcacgcccacaccacgatgtcggcgctggatggcgtcgtgagtgctgcagcgttg
gtgaagcgcgccgcggaatgggggcacgacgccattgccatcacggaccacggcgtgtgc
caggcgtatccggaagcgtatcaagcggccaagaaacacggagtgcgactcgtgcttggc
gtcgaggcgtacgtggtggacgatggtgggcttttggtctatcgcgagtgcgatcggccg
ctggacgacgagaccgagtatgtcgtgtttgacacggagacgaccgggctcaacgcgcgg
gaagacacgctcatcgagatcgccgcggtcaaggtcaaggcggggcacatcgtggacacg
tacgcgacgctcatcgatcccgagcggccgctcgacccgaaaatcgtcgagttgacgggc
atcacgaacgagatggtggtcggtcagccgaagctgaaggaggcgcttgacggattccgc
caattcgcgcgcggcgccgtgctcgtggcccataacgcggagttcgacgtgggattcttg
aatcaatgcgcggagcgcttgggcctcgatccgtgggaagaacccgtcattgacaccctg
gcgctcgcccgcgtgctctacccgggcgagaagaactacaagctgaagacgctcacccag
aagttttccgtcgagctcgtcaaccaccatcgggcgctggcggacagcgaggcgacagcc
aaagtattcgtgcgcatgctccaagacgcgaaggcgcgcgggatccacaacctgttggat
atgaaccatctccgcggtcagattgacatctcgcgcgttcggccgttccacgccaccgtg
ctggtccgcaatcgcgaggggctgcggaatctgtaccgcctcgtctccatcgcgcatacg
cagtatctgcaccgcgtgccgcgcattccgaaaagcgcgctcgctcgccaccgcgaaggg
ctgctgatcggcacagcgtgtcgccaaggagagcttatcgaggcgttctttcgcggcaaa
tccgaggacgagatcgacacgttgctcgagttctacgactatctggagatccagccgata
agtcattacgagccgcttgtgcgagagggcgtcgtggcgtcgtttgagcaggtgcgcgaa
ctcctgcgcaacatcgtggagattggcaagcgcctgaacaagccggtcgtggccacgggc
gacgtgcattatctggacgagcacgacgccatcttccgagagatctttctgcagtcgcaa
aagctggataccaagcagccgccccttcacttccgaacgaccgatgagatgctcgaggag
ttcgcgtttttgggagaagaggacgcgcgcgccgtcgtgatcgacaacccgcgccgtctg
gtggcgctgtgtgacgacgtgaagccgattccggatgagcttcacacgccggtcatcgaa
ggagcggaagaggaaatccgtaggctcgcttacgacaaggcgaagcgcatctacggggat
ccgctgcccgagctcgtcgagaagcggctcgagcgcgagctcaacgccattatctcacac
ggctatgcggtcatctacttgattgcccacaagctggttacgaagtctctgagcgacggg
tacttggtcggcagccgcggttcggtcggctcgtcgttggtggccaccatgacggatatc
accgaggtcaatccactgccgccccactacgtgtgcctgtcgtgtcactatcacgagttt
ttcctgcaaggtgagtacggatctggcttcgacctcccggacaaggcgtgccccaactgc
ggcgcgaagttgcacaaggacgggcaggacatcccgttcgagacgttcatgggcttcgat
ggggacaaggtgcccgacatcgacctgaacttctctggggagtatcagccgagggcgcac
cggtacacggaagagttgtttgggaaggaccacgtgttccgggcgggcaccatctccgta
gtggccgagaagacggcctacgggtatgtgcggaagttcgccgaggagcgcgggttggtg
ctgcgcaatgccgagatcgagcgcttggtccgaggatgcacgggcgtgaaacggaccacc
ggccaacatccgggcgggcaggtggtggtgccgcattatgtcgagatctatgatttcacg
ccgattcaataccccgcggacgatacgtcgtcggagacgctcacgactcacttcgactac
cactccgggctcgagaactgcctgttgaagctcgacatcctcggccacgacgatccgacc
gtcatccgcatgctgcaggatctcacgggcgtggatccgaagtccatcccgctcgacgat
cccgacgtgctggagctgtttcggagcacgcgtccgctcggcgtgaccccggaggaaatc
cggtcgaccaccggcacgtacgccattccggagttcggcacgcgctttgtccgccagatg
ctcgaggatacgcggcccacgacgttctcggagctcgtgcgcatttcggggttgtcgcac
ggcacggacgtctggctgaacaacgctcagaccctcattcgcgacaagattgcgaccctg
tctgaggtcatctgcgcccgagacgacatcatgctctacctcatccagaaggggctcgat
ccggcgcgtgcattcaagattatggaaggtatccgcaaggggaagggcgtcaaaccggaa
gacgaggtgtacatgcgggagcacggcgtgccggagtggtacatcgagtcgggcaagaag
atcaagtacatgtttccgaaggcgcacgccgcggcgtacgtgctgatggccgttcgaatc
gcgtggttcaaagtgcaccggccgctcgcattttacgcgacctatttcacggtgcgtgcg
gacgacttcgacgtggccgtgatgaccgcgggccgggaggccatcttgaagaagatcgag
gagatcgaggcgaagggcaacgtggcctcagccaaggagaagagcttcttgacggtcctc
gaggttgcgctcgagatggtggcccgtggataccggttcttgcctatcgatctgtacaag
tcgcatgcgacccagttcctcattgaggaagaggcgcaggggctcaggccgcctttcgcc
gccattcccggaattggggagacggcggcgcgcaacctgtatgaagcggcgcagcagggc
gaattcctgtcgctcgaagatcttcagtcgcgggcgcgcgcttcgcgggccgtgatcgac
gtgctcatggaactcggttgcctcgacgggctgccggagaccaatcagctttccttgttc
tga
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integrated database retrieval system
