Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1: TC41_2396
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Entry
TC41_2396 CDS
T01821
Symbol
hupB
Name
(GenBank) histone family protein DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
aad
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
Brite
KEGG Orthology (KO) [BR:
aad00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aad03032
]
TC41_2396 (hupB)
03036 Chromosome and associated proteins [BR:
aad03036
]
TC41_2396 (hupB)
03400 DNA repair and recombination proteins [BR:
aad03400
]
TC41_2396 (hupB)
DNA replication proteins [BR:
aad03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
TC41_2396 (hupB)
Chromosome and associated proteins [BR:
aad03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
TC41_2396 (hupB)
DNA repair and recombination proteins [BR:
aad03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
TC41_2396 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HTH_IclR
DUF4702
HTH_24
HTH_AsnC-type
Motif
Other DBs
NCBI-ProteinID:
AEJ44296
UniProt:
F8IGL6
LinkDB
All DBs
Position
complement(2278773..2279045)
Genome browser
AA seq
90 aa
AA seq
DB search
MTKTELVAEIAARTGLKQSQVWQTLNSLCEVATERLQAGEDVALPPLGKFRYVVRAARQG
RNPKTGETIEIPEKATVRFLPSSALKGRVN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagacggagttggtcgcggaaatcgcagcgaggacaggtttgaagcaatcccag
gtatggcaaaccctcaattctctctgtgaagtcgcgacggagcgattgcaggcgggcgag
gacgtagccttgcctccactgggcaagtttcgctacgtggtgcgcgccgcgcggcagggg
cggaatccgaaaacgggtgaaaccatcgaaatccccgaaaaagcgacggtgcgcttcctg
ccgtcaagcgcgctgaagggacgtgtgaattga
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