Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1: TC41_3048
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Entry
TC41_3048 CDS
T01821
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aad
Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1
Pathway
aad03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aad00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TC41_3048 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aad03021
]
TC41_3048 (rpoC)
03400 DNA repair and recombination proteins [BR:
aad03400
]
TC41_3048 (rpoC)
Enzymes [BR:
aad01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TC41_3048 (rpoC)
Transcription machinery [BR:
aad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TC41_3048 (rpoC)
DNA repair and recombination proteins [BR:
aad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TC41_3048 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AEJ44933
UniProt:
F8ILH9
LinkDB
All DBs
Position
complement(2879419..2883066)
Genome browser
AA seq
1215 aa
AA seq
DB search
MHKLFDLNNFEFMKIGLASPEKIRSWSHGEVKKPETINYRTLRPEKEGLFCEKIFGPTRD
WECHCGKYKRIRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWFFKGIPSRMGLI
LDMSPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFKAGMGAEAIRT
LLQEIDLDREVEILREELRTAQGQRRNRAIKRLEVIEAFRQSGNKPSWMILEALPVIPPD
LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALID
NGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRMYQCGL
PKEMALELFKPFVMKELVARGLAHNIKSAKRKVERVSDEVWDVVEDVIKQHPVLLNRAPT
LHRLGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAH
NILNPKDGKPVVTPTQDMVLGSYYLTIEREGAPGEGKVFASVSEVEYALHQRLITLQSRI
ALPAKAVGKTSFTEKQANALLITTPGKLIFNSIFPADFPYLNSAAKSNLLGGPPDETFIF
EKGVDIREAILKRPIPKAIIKKDLGNILAECFRRYGTTMTAEILDKVKQLGFHYSTLAGI
TISISDIVVPEEKKRIIAEAEAKEHKLKLQYRRGLITEEEQYVTFSQIWSEAKEQISSIL
MESMDQFNPIYMMATSGARGSNSQITQLAGMRGLMANPSGEIIQLAIKSNFREGLSVLEY
FISTHGARKGLADTALRTADSGYLTRRLVDVAQDTIVREHDCGTDKGLRVMEIRDGSEVI
EDLRDRLEGRVAFQDVYHPETGEKIVGKNEMIDEEAADKIVAAGIKEVTIRSVLTCRTRH
GVCQLCYGRNLATGDMVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRV
QELFEARNPKGQAVIAEFDGVITDIREGKDKREIELTGESETKTYQIPYGSRIRVSVGQQ
LEAGEELTEGSVDPKEMLRVKGLQGVQNYLLREVQRVYRLQGVDINDKHIEVMIRQMLRK
VRILDAGDTDLLPGTYVDLFEYEAANREALLSGKEPAVARPALLGITKASLETDSFLSAA
SFQETTRVLTEAAIKGKVDRLLGLKENVIIGKLIPAGTGMVRYRNVEPEVVRPGDAEAAA
TGEEGAETEAVSSAE
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
gtgcacaagttgtttgacctgaacaactttgagttcatgaagattgggctcgcgtcgccg
gaaaagatccgctcctggtcccacggcgaggtgaagaagccggagaccatcaactaccgc
acgctccgcccggagaaggaggggctgttctgcgaaaagatcttcggcccgacgcgggac
tgggagtgccactgcggcaagtacaagcggatccgctacaagggtgtcgtgtgtgaccgc
tgcggcgttgaggtcacgcggtccaaggtgcgccgcgagcgcatggggcacatcgagctg
gcggcgcctgtctcgcacatctggttcttcaagggcatcccgagccgcatggggctcatc
ctcgacatgtcgccgcgggcgctcgaggaagtcatctacttcgcgtcgtatgtcgtgacc
gatcccggcgacacgccgctcgagaagaagcagttgctctcggagaaagagtatcgatcc
taccgcgagaagtacggctacgcgttcaaggcaggcatgggcgccgaggcgattcgcacg
ctcctgcaggagatcgatctcgaccgcgaggtcgagatcctgcgcgaagaactgcgcacg
gcccaggggcagcggcgcaaccgcgccatcaagcgcctggaggtcattgaggcgttccgc
cagtccggcaataagccgagctggatgatcctcgaagcgctgccggtcattccaccggac
ctgcgtcccatggtgcagctggacggcggccgcttcgccacgtccgacctgaacgatctg
taccgccgcgtcatcaaccgcaacaaccgcctgaagcgactgctcgatctcggcgcgccc
gacatcatcgtgcagaacgagaagcgaatgttgcaggaggccgtggacgcgctgatcgac
aacggccggcgcggtcgcccggtgacggggcctggcaatcggccgctcaagagcctgtcg
cacatgctgaaaggcaagcagggccgcttccgccagaacctgctcggcaagcgcgtcgac
tattctggtcgatccgtcatcgtggtgggccctgagttgcgcatgtaccagtgcggcctg
ccgaaagagatggcgcttgagttgttcaagccgttcgtcatgaaggaactggtggcgcgc
gggcttgcgcacaacatcaagagcgcgaagcgcaaggtcgaacgcgtgtcggacgaagtc
tgggatgtcgtcgaggacgtgatcaaacagcatcctgtgctgttgaaccgcgcgccgacg
ctgcaccgcttgggcattcaggcgttcgagcctgtccttgtcgaaggccgcgccatcaag
ttgcatcctctggtctgcacggcgtacaacgcggacttcgacggcgaccagatggccgtg
cacgtgccgctttccgccgaggctcaggcggaggcgcggttgctcatgcttgccgcccac
aacatcctgaacccgaaggacggcaagccggtcgtcacgccgacgcaggacatggtgttg
ggatcgtactatttgaccatcgagcgcgagggcgcgcccggcgagggcaaagtctttgcg
tccgtgtccgaggtggagtatgcgctccatcagcggctcatcacgctgcagtcgcgcatc
gcgctgccggccaaggcggttggcaagacgtcgttcacggaaaaacaagcgaatgcgctt
ctgatcacgacgccgggcaagctcatcttcaacagcatcttcccggccgacttcccgtat
ctgaactctgcggcgaagtccaacctgctcggcggtccgccggacgagacgttcatcttc
gagaagggcgtggacatccgcgaggcgattctcaagcgtccgatcccgaaggccatcatc
aagaaggatctgggaaacattctggccgaatgcttccgccgctacggcacgacgatgacg
gccgagatcctcgacaaggtgaagcagctcggcttccattattcgacgctcgccgggatt
accatctcgatcagcgacatcgtggtgccagaagagaagaagcgcatcatcgccgaggcg
gaggccaaagagcacaagctcaagcttcaatatcggcgcggcctcatcacggaagaggag
cagtacgtcaccttcagccagatctggtcggaggccaaggagcagatttcgtccattctc
atggagagcatggaccaattcaaccccatttacatgatggccacctcgggtgcgcgcggt
tccaactcgcagatcacgcagctcgcgggcatgcgcggactcatggcgaacccgtcgggc
gagatcatccagctggccatcaagtccaacttccgtgagggcctgtccgtgttggagtac
ttcatctcgacccacggcgcgcgcaagggtctcgctgatacggcgctgcgcacggcggac
tcgggttatctcacgcggcgcctcgtcgacgtggcgcaggataccatcgtgcgcgagcac
gactgcggcacggacaagggcctgcgcgtgatggaaatccgggacggcagcgaagtcatc
gaagacctgcgcgatcgcctggaaggtcgtgtcgcgttccaggatgtgtaccatccggag
acgggcgagaagatcgtcggtaagaatgaaatgattgacgaggaggccgcggacaagatt
gtcgcggcgggcattaaagaagttaccatccgctccgtcctgacctgccgcacgcgccac
ggggtgtgccagctctgctacggccgcaacttggcgacgggggacatggtcgaggtgggc
gaagcggtcggcatcatcgcggcgcagtccatcggcgagccgggtacgcagctcaccatg
cgcacgttccacacgggcggcgtggcgggtgacgatatcacgcaaggtctgccgcgcgta
caggagctcttcgaggcccgcaaccccaagggccaggccgtgatcgcggagttcgacggc
gtgatcaccgacatccgtgagggcaaggacaagcgcgaaatcgagctcactggcgagagc
gagacgaagacgtaccagatcccatacggatcgcgcattcgggtcagtgtcggccagcag
ctggaggctggcgaagagctcacggagggctcggtggacccgaaggaaatgctgcgcgtg
aagggcctgcagggcgtgcagaactatctgctgcgcgaggtgcagcgcgtctaccgtctg
cagggcgtggacatcaacgacaagcacatcgaggtcatgatccggcagatgctgcgcaag
gttcgcattctcgacgcaggcgatacggacctgttgccggggacgtacgtggatttgttc
gagtacgaggcggccaaccgggaggcgcttctgtccggcaaagagcctgccgtggcgcgc
ccggcgttgctcggcattaccaaggcgtcgcttgagacggactcgttcctctcggccgcg
tccttccaggagacgacgcgcgtgctcaccgaggcggccatcaagggcaaggtcgaccgc
ctgctcggcctgaaagagaatgtgatcatcggcaagctgatcccggcgggcacgggcatg
gtgagatatcgcaatgtcgagccggaggtcgtccgtccgggcgacgcagaagcggctgcg
acgggcgaagagggcgccgaaaccgaggctgtctcgagcgccgaatga
DBGET
integrated database retrieval system
