Aquifex aeolicus: aq_1945
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Entry
aq_1945 CDS
T00013
Symbol
rpoC
Name
(GenBank) RNA polymerase beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aae
Aquifex aeolicus
Pathway
aae03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aae00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
aq_1945 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aae03021
]
aq_1945 (rpoC)
03400 DNA repair and recombination proteins [BR:
aae03400
]
aq_1945 (rpoC)
Enzymes [BR:
aae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
aq_1945 (rpoC)
Transcription machinery [BR:
aae03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
aq_1945 (rpoC)
DNA repair and recombination proteins [BR:
aae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
aq_1945 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Band_7_1
CdiI
Motif
Other DBs
NCBI-ProteinID:
AAC07724
UniProt:
O67763
LinkDB
All DBs
Position
1366175..1370899
Genome browser
AA seq
1574 aa
AA seq
DB search
MSEARRGIFPFSKIKLMLASPEDIRSWSHGEVKRPETLNYRTLKPEKDGLFCAKIFGPIK
DYECLCGKYRGKRYEGKICEKCGVEVTTSYVRRQRFGHIELAAPVVHIWFLKSTPSKIGT
LLNLTSRDVERVAYFESYLVIEYPNEEEEEKFEKDEHTIPLNDGISTKWVKLHVVNEEEF
EEKYAFTIDEKYEHGMGAEILKEVLSKLDLDAYSRKLKEIVKPYSIGFEDLGKEIEQKYK
NLYQKLIKVIADDFRAYGVEIKGLEDHGLSLEQAIHRILNEELYLNVETGEISLEDCGDS
CLTGRDALKEYYERVREHKKDIPIFEKIKEDIRSTVLREISEARIRKALRTLQLVEGFKK
SGNRPEWMILEVLPVLPPELRPLVALDGGRFATSDLNDFYRRVINRNNRLKRLIELNAPD
IIIRNEKRMLQEAVDALIDNGKRGNPVKQNGRPLKSLADYLKGKQGRFRQNLLGKRVDYS
GRSVIVVGPELQMHQCGLPKIMALELFKPFVYRRLEEKGYATSIKHAKRLVEQKTPEVWE
CLEEVVKEHPVLLNRAPTLHRPSIQAFEPVLVEGKAIQLHPLVCPPFNADFDGDQMAVHV
PLGIEAQLESYILMLSTQNVLSPAHGKPLTMPSQDMVLGTYYITHDPIPGRKGEGKAFGT
FEEVLKALELGHVDIHAKIKVKVGNEWIETTPGRVLFNSIMPEGQPFVNKTLDKKGLSKL
ITELYIRVGNEETVKFLDRVKELGFLRSTLAGISIGVEDLQVPKAKKKIIEEALKKTEEI
WNQYVQGIITNKERYNRIIDVWSEATNLVSKAMFEEIEKSKRIENGKEYPGTFNPIYMMA
ISGARGNRDQIRQLAGMRGLMAKHSGEFIETPIISNFREGLSVLEYFISTYGARKGLADT
ALKTAFAGYLTRRLVDVAQDITITERDCGTVKGFEMEPIVEAGEERVPLKDRIFGRVLAE
DVKDPYTGEIIARRNEVIDEKLAEKITKAGIEKVRVRSPLTCEAKHGVCAMCYGWDLSQR
KIVSVGEAVGIIAAQSIGEPGTQLTMRTFHIGGAATAQKVQSFVKAESDGKVKFYNVKLI
VNRKGEKINISKDAAIGIVDEEGRLLERHTIPYGARILVEEGQEVKAETKLADWDPFNTY
IIAEVGGKVELRDIILDVTVREERDPITGKTASVISFMRPRDAMLHTPRIAVITEDGKEY
IYDLPVNAILNIPPEKISLEWRVCPTCSESEETTIQHQYYVVKDLEVQPGDILARIPKET
AKVRDIVGGLPRVEELFEARKPKNPAILSEIDGYVKIYEDADEVIIFNPRTGETAKYSIK
KDELILVRHGQFVKKGQKITETKVAEIDGQVRIKGRGFKVIVYNPETGLQREYFVPKGKF
LLVKEGDFVKAGDQLTDGTPVPEEILRIKGIEELEKFLLKEVQMVYKLQGVDINDKHFEI
IIKQMLKKVRIIDPGDSRFLVGEEVDKEELEEEIQRIKLEGGKLPKAEPVLVGITRAALS
TRSWISAASFQETTRVLTDASVEGKIDELRGLKENVIIGNIIPAGTGVDEYREVDVIPAE
EKVLEEKKEPKEGS
NT seq
4725 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagcaagaaggggtatcttccccttctcaaaaattaaattgatgctcgcttct
cccgaggatatcagaagctggtctcacggtgaagttaagagacctgaaactctaaactac
agaactctgaaacccgaaaaggacggtctcttctgcgctaagatttttggtcccataaaa
gattacgagtgtctctgcggaaagtacaggggaaagaggtacgaaggaaagatatgtgaa
aagtgcggtgttgaagttacaacttcttacgtaaggagacagaggttcggtcacatagaa
ctcgctgctcccgtcgttcacatatggttcttaaagagcacaccctccaagataggaacg
ctccttaacctcacttcaagagacgttgaaagggtcgcttactttgagtcttacctcgtt
attgagtatccaaacgaggaagaagaggaaaagtttgagaaggacgagcacacgatacca
ctcaacgacggcatttccaccaagtgggtaaaactccacgtggtgaacgaggaggagttt
gaggagaagtacgccttcaccatagacgaaaagtacgagcacggaatgggggcggaaata
ctcaaagaagttctatcaaaactcgacctagacgcctactccagaaaactgaaggaaata
gtaaagccctactcaataggatttgaagacctcggaaaagaaattgaacagaagtacaag
aacctttaccagaaacttatcaaggttatcgcggacgacttcagggcttacggcgttgag
ataaaaggacttgaagatcacggactcagcctagaacaggctatccacaggattctaaac
gaagaactgtacctcaatgtagagacgggagaaatttcccttgaagactgcggagacagc
tgtctcacgggaagggacgctctgaaggagtactacgaaagggtaagggaacacaaaaag
gacatccccatctttgaaaagataaaggaagacataagatccacggtactgagggaaata
tccgaagccagaatcaggaaggcgctcagaactctccagctagtagagggcttcaagaag
agcggaaacagaccagagtggatgatacttgaagttcttccagttcttcctccggaacta
cgtcccctcgttgcactggacggaggaaggtttgcaacttctgatctgaacgacttctac
agaagggttataaacaggaataacagactaaagagattaatagaactgaacgcccccgac
ataatcatcagaaacgaaaagagaatgcttcaggaggcggttgatgccttaatagacaac
ggaaagagaggaaaccctgtaaagcaaaatggaagacctttaaagtctcttgcggactac
ctgaaaggtaaacagggaaggtttaggcaaaacctcctcggaaagagagttgactattca
ggacgttccgttatagtcgtcggtccagaactccagatgcaccagtgcggtcttcccaag
ataatggccctcgaactcttcaaacccttcgtatacaggagactggaagaaaaagggtat
gcgacttccataaaacacgcaaagagactcgtagagcaaaagacacccgaagtatgggag
tgccttgaagaagtggtcaaagaacaccccgttctgctaaaccgtgctccaacgctccac
agaccttcaattcaggcttttgaacccgttctcgtagaaggaaaagccatacagctacac
cccctcgtttgcccgccctttaacgcggactttgacggagaccaaatggccgtacacgtc
cccctcggaatagaggctcagcttgagtcttacatacttatgctctccacgcaaaacgta
ctttcccccgcacacggaaaacccctcacgatgccctcacaggacatggttcttgggact
tactacatcacccacgaccccatacccggaaggaaaggagaaggaaaagctttcggtacc
tttgaagaagtcctcaaagctcttgaactcggacacgttgacatacacgcgaagataaag
gtaaaagttggaaacgagtggatagaaacaactcccggaagggtactcttcaactccata
atgcccgaaggacagcccttcgttaacaaaacccttgacaagaaaggactttcaaagcta
atcactgaactctatataagggtaggaaacgaggagactgttaagttccttgaccgtgtg
aaagaacttggattcctcaggtcaacgcttgcgggtatttccattggtgtggaagacctg
caggttcccaaggcaaagaagaagataatagaggaagccctcaagaagacggaagagata
tggaaccagtacgttcagggtatcatcaccaacaaggagaggtacaacaggataatagac
gtctggtccgaagccacgaacctcgtttccaaggcgatgtttgaagagatagaaaagtct
aagagaatagaaaacggaaaggaatacccgggaacctttaaccccatatacatgatggca
atctctggagcgagaggtaacagggaccagataagacagcttgcaggaatgagaggtctt
atggctaagcactctggtgagtttatagaaacgccgattatctcaaacttcagggaaggt
ctttccgttctcgagtactttatatccacttacggtgcgagaaagggtctcgcggacacc
gccctgaaaaccgcatttgccggatatctgacgagaagactcgttgacgtagctcaggac
ataaccattactgaacgtgactgcggaaccgttaaaggctttgaaatggaacccatagta
gaagcgggtgaagagagggttcccctcaaggacagaatattcggaagggttctcgcggaa
gacgtaaaagatccctacaccggtgagataatcgcaaggagaaacgaggtaatagacgaa
aaactcgcggaaaagataacgaaggcgggaatagaaaaggtaagggtacgctcacctctc
acctgtgaggcaaaacacggcgtttgtgctatgtgctacggatgggatctctcccagagg
aagatagtatccgtgggtgaggcggttggaattatagcagcacaatccataggtgagccc
ggaacacagctcaccatgagaaccttccacataggtggtgcagcaacagctcagaaggtt
cagagcttcgtaaaggctgaaagtgacggtaaagtcaagttctacaacgtaaaactcata
gtaaacagaaagggtgaaaagataaacatctccaaggacgcagctatcggaatagtggac
gaagaaggcaggctccttgaaagacacactataccttacggtgcgagaattctcgtagaa
gaaggccaggaagttaaagcagaaactaaactcgcagattgggatcccttcaacacttac
ataatcgctgaagtaggcggaaaggtagaactcagggacataatcctcgacgttaccgta
agggaagaaagggatccgataacaggaaagacggcgagcgtaatatccttcatgagacca
agagacgctatgctacacactcccagaatagctgtcatcacagaagacgggaaagagtac
atctacgaccttcctgttaacgccattctcaacataccgcccgaaaagatatccctcgag
tggagagtatgccccacctgctccgagtccgaagagaccactatacagcaccagtactac
gtggttaaagaccttgaagttcaacccggtgacatactcgcgagaattccaaaagaaact
gctaaggttagggacatcgtcggtggtcttccgagggttgaagagctctttgaggcgaga
aagcccaagaatcccgcaatactcagcgaaatagacggttacgttaagatttacgaggac
gcggacgaggtgatcatattcaaccccagaaccggtgaaaccgctaagtactccataaag
aaggacgagctaatcctcgtaagacacggtcaattcgtcaagaaaggtcaaaagattacg
gaaacaaaggttgcggaaatagacggtcaggtaaggattaagggaagaggctttaaggta
atcgtttacaaccctgaaacaggactacagagggagtacttcgttcccaaaggtaaattc
ctgctcgttaaggaaggtgacttcgtaaaggcaggggaccagctcacagacggaacaccc
gtacccgaagaaatactcaggataaagggaatagaagagctggaaaaattcctccttaaa
gaagtccagatggtttacaaattgcaaggtgttgacataaacgacaaacactttgaaatc
ataatcaagcagatgctcaagaaggtgaggattatagaccccggagacagcagattcctc
gtaggcgaagaagtggacaaagaagaactcgaagaagaaattcaaaggatcaagctcgaa
ggcggaaaactgcccaaggctgaacccgtactcgtcggtattacgagagcagcactttcc
acgagaagctggatttccgctgcatccttccaggaaactacgagagtactcacagacgct
tccgttgaaggtaagatagacgaactccgaggtcttaaagagaacgtaataatcggaaac
ataatacccgccggaacgggtgtggacgagtacagagaagtggacgtaatccctgcggaa
gaaaaggttctcgaagagaagaaagaacccaaagagggctcttaa
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