Achromobacter aegrifaciens: RA224_22775
Help
Entry
RA224_22775 CDS
T09343
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
aaeg
Achromobacter aegrifaciens
Brite
KEGG Orthology (KO) [BR:
aaeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaeg03019
]
RA224_22775 (hrpA)
Enzymes [BR:
aaeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
RA224_22775 (hrpA)
Messenger RNA biogenesis [BR:
aaeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
RA224_22775 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
T2SSE
NACHT
nSTAND3
AAA_25
SLFN-g3_helicase
AAA_30
ResIII
SRP54
HA2_N
TsaE
PhoH
AAA_23
Motif
Other DBs
NCBI-ProteinID:
WLW60034
LinkDB
All DBs
Position
complement(4880848..4884777)
Genome browser
AA seq
1309 aa
AA seq
DB search
MPESSSPRAPKAADAAAPAAAADAQNARRAPRPERPIPVVTYPEDLPVSARRQEIARAIA
SHQVVIVSGETGSGKTTQLPKICLELGRGRQKMIGHTQPRRLAATSVAKRIAEELNTPMG
EVVGYQVRFNDRTGPNASIKLMTDGILLAESQRDPLLRRYDTIIIDEAHERSLNIDFLLG
YLKQLLPRRPDLKIIITSATIDAERFARHFAASEDKLAPVIEVSGRLYPVEVRYRPVREE
LAEDEAAPAKPGRDRERMSGDEERDLIDAIVDAVDECARHGPGDVLVFLPGEREIRESAE
ALRKRHPAGTEVLPLYARLSQAEQEQIFHPRTNARRIVLATNVAETSLTVPGIRFVVDSG
LARIKRYSWRNKVEQLRIEPISRASANQRAGRCGRVGPGVCIRLYDELDFNNRAPFTDPE
VLRSSLASVILRMKSLKLDDIEQFPFVEAPPGRAVADGYHLLQELGAIELASASDDDTDA
SRTGSSFVLTRTGHELAKLPVDPRIGRMILAAREHQCLAEMLIIASALSVQDARDRPMQE
REAAEAAHAKFADDKSEFISFLKLWRWYGEQVQHKASQRKLVALLRQNFLSPIRLREWHD
VHTQLAALVGEQGWRLNQTEATYEQLHMALLSGLLGNIGFKSDEGGHYQGAREIRFHIHP
GSRLVKKAGRWIVAAELVETTRLYARCVARIDPVWLEKVGAHLIRKNWSDPRWEKKAGQV
VANERATLYGLTIYTGRRIQYGRVNPTQARELFIRQALVPGEIDTRLAFVAHNRKLIAGI
EKLEHQTRRPDILVDDELIHAFYDRQLPADISQTATLEKWVSGLDKAAAAKLLLTRDELM
RHEAAGVTTDVFPKKVEWQGVSMALDYHFEPGSPRDGVTLSVPLFALNQIDPARCEWLVP
GMLKEKVHLLLKSLPQKLRRHCVPLPDYAAGFYDRWFERQADPQQGLVEAIIADMWDQVQ
IRPAAADFKLETLPAHLFMNFRVVDEHGRMLAAGRNLAQLRAEFGKQAQATFQQLAASDT
QVAQALAHENLTAWSFGPLPEIMEIKRRGQSVIGYPALVDRGAHCDLDVFDDPDEARKHH
RAGLLRLFRLGLREQVKFLEKNLADLTKISMLYMTLGTQEELRDQIIDCALGQACLADPW
PVNEQQFEARRAEGKGRLGLLAQEVARLAGAVLTEWAAVQRKLPQAKPHASAYADLQAQL
GALMPKWFIRDTPYAQLAHFPRYLKAVLARIDKLRADPARDAKLVAEMAPLLTQYQRARS
ALKGAPDPRLDEFRWLLEELRVALFAQELRTPMPVSVKRLMKSWESLKR
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaatcctccagcccgcgtgcgcccaaggccgcggacgcggcggctccagcggca
gcggcggacgcgcagaacgcgcgccgcgcgccgcgtcccgagcggcccatacccgtggtc
acttaccccgaagacctgcccgtcagtgcgcggcgccaggagatcgcgcgcgccatcgcc
agccaccaggtggtgatcgtcagcggcgaaaccggctcgggcaagaccacccagctgccc
aagatctgcctggaactgggccgcggccgccagaagatgatcggccacacccagccgcgc
cgcctggccgcgacctcggtggccaagcgcatcgcggaagagctgaacacgcccatgggc
gaggtggtgggctaccaggtgcgcttcaacgaccgcaccggccccaacgcgtccatcaag
ctgatgacggacggcatcctgctggccgagtcgcagcgcgatccgctcttgcgccgctac
gacaccatcatcatcgacgaggcgcacgagcgcagcctgaacatcgatttcctgctgggc
tacctgaagcagctgctgccgcgccgcccggatctgaaaatcatcatcacctcggccacc
atcgacgccgagcgcttcgcccggcactttgccgcgtccgaggacaagctggcgcccgtc
atcgaggtgtccggccggctgtatcccgtcgaggtccgctaccgccccgtgcgcgaggaa
ctggcggaagacgaagccgcgccggccaagcccggccgcgaccgcgagcgcatgtccggc
gacgaagagcgcgacctgatcgacgccatcgtggacgccgtggacgaatgcgcgcggcac
ggccccggtgatgtgctggtgttcctgcccggcgagcgcgagatccgcgaatccgccgag
gcgctgcgcaagcgccatccggccggcaccgaggtcttgccgctgtacgcgcgcctgtcg
caggccgagcaggagcagatctttcatccgcgcaccaatgcgcggcgcatcgtgctggcc
accaacgtggcggaaacctcgctgaccgtgccgggcatccgcttcgtggtcgacagcggg
ctggcgcgcatcaagcgctattcctggcgcaacaaggtcgagcagctgcgcatcgagccg
atcagccgcgcctcggccaaccagcgcgccggccgttgcggccgggtggggccgggcgtc
tgcatccggctctacgacgagctggacttcaacaaccgggcgccgttcacggatccggaa
gtgctgcgctcgtcgctggcctcggtcatcctgcggatgaagtcgctgaagctggacgac
atcgagcagttccccttcgtcgaggcgccgccgggccgcgcggtggccgacggctaccac
ctgctgcaggagctgggcgcgatcgaactggcgtcggcctcggacgacgacacggatgct
tcgcgcaccggctcgtccttcgtgctgacgcgcacgggccacgagctggccaagctgccg
gtggacccgcgcatcggccgcatgatcctggccgcgcgtgaacaccagtgcctggccgag
atgctgatcattgcctcggccctgtcggtgcaggacgcgcgcgaccggcccatgcaggag
cgcgaggccgccgaggcggcgcacgccaagttcgccgacgacaagtccgagttcatctcc
ttcctgaagctgtggcgctggtatggcgagcaggtgcagcacaaggcctcgcagcgcaag
ctggtggccctgctgcgccagaatttcctgtcgccaatccggctgcgcgaatggcacgac
gtgcacacccagctggccgcgctggtcggtgagcagggctggcgcctgaaccagaccgag
gccacctacgagcagctgcacatggcgctgctgtcgggcctgttgggcaatatcggcttc
aagagcgacgaaggcggccactaccagggcgcgcgcgagatccgtttccatatccacccg
ggttcgcggctggtgaaaaaggcggggcgctggatcgtggcggccgaactggtcgagacc
acccgcctgtacgcgcgctgcgtggcgcgcatcgatccggtgtggctggaaaaggtcggc
gcgcatctgatccgcaagaactggtccgatccgcgatgggaaaagaaggccgggcaagtg
gtggccaatgaacgggccacgctgtacgggctgaccatttacaccggccggcgcattcag
tacggccgggtcaatccgacccaggcgcgcgagctgttcatccgccaggctttggtgccg
ggcgagatcgacacgcggctggctttcgtggcgcacaaccgcaagctgatcgcgggcatc
gaaaagctggaacatcagacccgccgcccggacattctggtcgacgacgagctgatccac
gccttctacgaccgccagctgccggccgacatttcgcagacggcgacgctggaaaagtgg
gtgtcggggctggacaaggcggccgccgccaagctgctgctgacgcgcgacgagctgatg
cgccacgaagccgcgggcgtcacgaccgacgtcttccccaagaaggtggaatggcagggc
gtgtcgatggcgctggattaccacttcgaaccgggttcgccgcgcgacggcgtgaccctg
tcggtgccgctgttcgcgctcaatcagattgatccggcgcgctgcgaatggctggtgcct
ggcatgctcaaggaaaaggtgcacctgctcttgaagtcgctgccgcagaagctgcgccgc
cattgcgtgccgctgccggattacgccgcgggcttctacgaccgctggttcgaacgccag
gctgatccccagcaggggctggtggaggcgatcatcgccgacatgtgggaccaggtgcag
atccgccccgccgcggcggacttcaagctggagaccctgccagcccacctgttcatgaat
ttccgggtagtggacgagcacggccgcatgctggcggcgggacgcaacctggcgcagctg
cgcgccgaattcggcaagcaggcgcaggccacgttccagcagttggcggccagcgacacc
caggtggcccaggcgctggcgcacgagaacctgactgcctggtctttcggccccttgccg
gagatcatggagatcaagcggcgcgggcagtcggtgatcggctatccggcgctggtggac
cgcggcgcgcattgcgacctggacgtgttcgacgatccggacgaagcgcgcaagcaccat
cgcgcgggcttgctcaggctgttccggctggggctgcgcgaacaggtgaaattcctggaa
aagaacctggcggacctgaccaagatcagcatgctctacatgacgctggggacgcaggaa
gagctgcgcgaccagatcatcgattgcgcgctggggcaggcctgcctggccgacccctgg
ccggtcaacgagcagcagttcgaagcccggcgggccgagggcaagggccggctgggcctc
ctggcgcaggaagtggcgcgcttggcgggggcggtgctgacggagtgggcagcggtgcag
cgcaagctgccgcaggccaagccgcacgcttcggcctatgcggacctgcaggcccagttg
ggggcgctgatgccgaaatggttcatccgcgacaccccgtacgcccaactggcgcatttc
ccgcgctacctgaaggcggtgctggcgcgcatcgacaagctgcgcgccgatccggcgcga
gacgccaagctggtggcagagatggcgccgctgctgacgcagtaccagcgggccagatcc
gcgctgaagggggcgcccgacccccgcctggacgagttccgctggctgctggaggaactg
cgcgtggcgctgttcgcgcaggagctgcgcacgcccatgccggtctcggtgaagcggctg
atgaaaagctgggaatccctgaagcgttga
DBGET
integrated database retrieval system
