Achromobacter aegrifaciens: RA224_23060
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Entry
RA224_23060 CDS
T09343
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aaeg
Achromobacter aegrifaciens
Pathway
aaeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA224_23060 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaeg03019
]
RA224_23060 (rnr)
03016 Transfer RNA biogenesis [BR:
aaeg03016
]
RA224_23060 (rnr)
Enzymes [BR:
aaeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
RA224_23060 (rnr)
Messenger RNA biogenesis [BR:
aaeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RA224_23060 (rnr)
Transfer RNA biogenesis [BR:
aaeg03016
]
Prokaryotic type
tRNA degradation factors
RA224_23060 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
HTH_20
OB_Dis3
HVO_A0261_N
Rrp44_S1
HTH_IclR
HTH_11
DUF5818
Motif
Other DBs
NCBI-ProteinID:
WLW60088
LinkDB
All DBs
Position
complement(4944214..4946688)
Genome browser
AA seq
824 aa
AA seq
DB search
MAKRSNNESNNNRSTPLPEAPPDFDPDVPSREAILKALRAAGSPLSPVELAERMGVERAA
TMVGFERRLGAMERDGQLMPNRKGVLLLATKLDFVAGKVLGHRDGFGFLLRDDGGPDLFL
SPREMLKVLHGDRVLVKPTGEYRGKPEGTIVEVIERRTNKLVGRFLHEHGLSIVVPEDQR
IKHDILIPPSDTNGAQHGQVVAVEIMEQPTRHTQPLGRVAEVLGEIDDPGMEIEIAVRKF
DVPVDFSEAALKQAARLPDVVRKTDLKDRVDLRDVPLITIDGEDARDFDDAVYCEPVELG
TGQRKRPGWRLLVAIADVSHYVRPGDALDDDAIERGTSVYFPRRVIPMLPESLSNGLCSL
NPDVDRLVLVCDMVIPASGAKAGTVTAYQFYNAVMHSHARTTYTNIWAALQQPGGPAAHA
MRSVMPQVQHLYELFQLLAQGRKKRGAIDFDTVETKIVCNELGRIEQIVPSVRNDAHKLI
EECMLAANTCAADFMARSKHPGLYRIHEGPTPERLQSLREFLRTMGLSLGGGETPTAKDY
GDFLDSVRGRPDYQLLQTMCLRSMQQAVYSPDNMGHFGLSYPGYSHFTSPIRRYPDLLTH
RVIKALLAGQRYVPSLEDQPVVIGRTQREHEHAIWEKMGLVLSASERRADEASRDVEAWL
KCWFVKERVGEDFSGTVTGVASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDALHELRGE
RTGMRYRLTDKVQVQVSRVDLEARRIEFRLVQGTSFDALRKASARSPDESSRRVKKAASP
KPAALKGQTAKERRAEAKKASKPPRAPKASKRAAPAKKAAHKRH
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
ttggcaaaacgatcgaataacgaatcgaataacaacagatcaacacccttgcccgaagcg
ccgccggacttcgatcctgatgtcccgtcccgtgaagccatcctgaaagcgctgcgcgcc
gcaggctcgccgctgtctccggtggaactggccgaacgcatgggcgtcgagcgcgccgcg
acgatggtgggatttgagcgccgcctgggcgccatggagcgcgacggccaattgatgccc
aaccgcaagggcgtgttgctgctggccaccaaactggacttcgttgccggcaaggtgctg
gggcatcgcgacggcttcggcttcctgctgcgtgatgacggcggcccggacctgttcctg
tcgccgcgcgaaatgctcaaggtgctgcatggcgaccgcgtactggtcaagcccactggc
gaataccgcggcaagccggaaggcaccatcgtcgaagtcattgagcgccgtaccaacaag
ctggtggggcgcttcctgcacgagcatggcctgtccatcgtcgtgcccgaggaccagcgc
atcaagcatgacatcctgattccgcccagcgacaccaacggcgcccagcatgggcaggtg
gtcgcggttgaaatcatggagcagcccacgcgccatacgcagccgctgggccgtgtggcc
gaggtgctgggtgagatcgacgatcccggcatggagatcgagatcgcggtgcgcaagttc
gacgtgccggtcgatttctccgaggccgcgctcaagcaggccgcccgcctgccggacgtg
gtcaggaagaccgatctcaaggaccgcgtcgacctgcgcgacgtgccgctcatcaccatc
gacggcgaggacgcgcgcgacttcgacgacgcggtgtactgtgaacccgtggagctgggt
acgggtcagcgcaagcgtccgggctggcgcctgctggtggccatcgccgacgtcagccac
tatgtgcgtccgggtgacgccctggacgacgacgcgatcgaacgcggcaccagcgtgtac
ttcccgcgccgggtcatcccgatgctgccggagtccctgtccaacggcttgtgttcgctg
aacccggacgtcgaccgcctggtgctggtttgcgacatggtcattccggccagcggcgcc
aaggccggcaccgtcaccgcctaccagttctataacgcggtcatgcactcgcatgcgcgc
accacctatacgaacatctgggccgccctgcagcagcccggcggtccggccgcgcacgcc
atgcgcagcgtcatgccccaggtccagcacctgtacgaactctttcaactgctggcgcaa
gggcgcaagaagcgcggcgccatcgacttcgacacggtcgaaaccaagatcgtctgcaac
gagctcggccgcatcgaacagatcgtgccgtcggtgcgcaacgatgcccacaagctgatt
gaagagtgcatgctggccgccaatacctgcgcggccgacttcatggcccgcagcaagcat
cccggcctgtaccgcatccacgaaggccccacgcccgagcgcctgcaatcgctgcgcgag
ttcctgcgcaccatgggcctgtcgctgggcggcggcgagacgcccacggccaaggattac
ggcgatttcctggattcggtgcgcggacgccccgactaccagctattgcagacgatgtgc
ctgcgctccatgcagcaggcggtctacagccccgacaacatgggccacttcggcctgtcc
tatcccggctacagccacttcacctcgcccatccgccgctatcccgacctgctgacgcat
cgtgtcatcaaggcgttgctggctggtcagcgctacgtgcccagcctggaagaccagccc
gtggtgatcggccgcacgcagcgcgagcacgaacatgccatctgggagaagatgggcctg
gtgctgtctgccagcgagcgccgcgccgacgaggcgtcgcgcgacgtcgaggcctggctg
aagtgctggttcgtcaaggagcgcgtgggcgaggacttcagcggcaccgttaccggcgtc
gccagcttcggcatcttcgtcacgctggataccctgcacgtcgaagggctggtgcatgtt
tccgagctgggcggcgagtacttccagttcaacgacgccctgcacgagttgcgcggcgag
cgtaccggcatgcgttaccgcctgaccgacaaggtgcaggtgcaggtgtcgcgcgtggac
ctcgaagcccgccgcatcgagttccgcctggtgcagggcaccagcttcgacgccttgcgc
aaggcctcggcccgcagtccggacgagtcttcccgccgcgtcaagaaggcagcgtcgccc
aagcccgccgccctgaagggccaaaccgccaaggagcggcgcgccgaggccaagaaggcc
agcaagccgccgcgggcgcccaaggcatccaagcgcgccgcgccggccaagaaggccgcg
cacaagcgccactga
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