Achromobacter aegrifaciens: RA224_25155
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Entry
RA224_25155 CDS
T09343
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aaeg
Achromobacter aegrifaciens
Pathway
aaeg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaeg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RA224_25155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaeg03019
]
RA224_25155
03009 Ribosome biogenesis [BR:
aaeg03009
]
RA224_25155
Enzymes [BR:
aaeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RA224_25155
Messenger RNA biogenesis [BR:
aaeg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RA224_25155
Ribosome biogenesis [BR:
aaeg03009
]
Prokaryotic type
rRNA processing factors
RA224_25155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
YidB
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
WLW60487
LinkDB
All DBs
Position
5391558..5394635
Genome browser
AA seq
1025 aa
AA seq
DB search
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNY
GEDRHGFLPFKEVARSYFKEGVDVRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDLPQGMSIIARTAGIGRNVEELQ
WDLSYLLQLWTAIDGAARDNSAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVMPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVTLPSGGAIVIDHTEALVSV
DVNSARSTRGADIEETALRTNSEAADEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQR
LRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHITCPRCNGTGVIRDAESSALH
VLRLLQEEAMKENTAAVHAQVPVDVATYLLNEKRADITKMEARLKVNLMLIPNKHLETPH
HHIERLRHDDPRLEELKTSFELVEAPATDAPWQPREHEIKSRPEALVKGITPSQPAPVST
PAPAPAPAPAATGGLGGLFKRLFGWLGGSSEAAKPAPAAQEDSAKRASSGRGKGRSGHDG
QERRGERHGSDRNRNRRGESRGEGAEASEGGRHHVRGNRRAEGDRQERGDRNNRNDARGE
RDTQATQAALASNRPEQAVEAGGEDSGAGRNRRRGRGRNRREEGQSDAPMSEQESMVAAL
AQTVATALPETKPAPEAAVVTAEAVEAEAVAEQTADGVPAVEGAEGAADPERKRRRRRSR
RGRRSQEEAGLAGSDDQQEDGADDDSIDQPEEAAAQPAVTAAQAVEPAVQVQAAPVQAQQ
PETAKAEPAQVAAAPVAAAPVEAQPATPVQVQAEQAVEPVAQPVQTAAAEVTQPVSVQAA
SEASAPAATETTPVEAAAVEPVVAPAAAPAAPVAPAAPVAPEAAAPAPAASQPIVLPAAA
PSAKAQALHDVVNAAGLQWVETDPDRHAQTQLRIAAAHTPVRLGRERKPVAPVSNEPLVQ
VETRH
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgcatgctgttcaatgcgacgcatcaggaagaattacgcgtcgctatcgtcgat
gggcaaaaactcatcgacctcgacatcgagactgccggccgcgaacaacgcaaaggcaat
atctacaaaggtgtcatcacccggatcgaacccggcctcgaagcctgcttcgtcaactac
ggtgaagaccgtcacggtttcctgcctttcaaggaagtggcccgcagctacttcaaggaa
ggcgtggacgtccgcagcgcccgcatccaggacgccctgcgcgaaggccaggaactgatc
gtccaggttgaaaaggaagagcgcggcaacaagggcgccgccctgaccacgttcatctcg
ctggccggccgctacctggtcctgatgcccaataacccccgtggcggtggcgtttcgcgc
cgcgtcgagggcgaggaccgccaggaactgcgcgacacgatggagcagctcgatctgccc
cagggcatgagcatcatcgcgcgcaccgccggcatcggccgcaacgtcgaagagctccag
tgggacctgtcctacctgttgcagctctggaccgcgatcgacggcgccgcgcgcgacaac
tccgcgccgatcctgatctacctggaatccagcctggtcatccgggccatccgcgactac
ttctccccggaaatcggcgagatcctcatcgataccgacgagatcgccgaccaggccacg
gccttcatgagcgtggtgatgccggacaacgtccagcgcgtcaaacgctaccgcgacgat
atcccgctcttctcccgcttccagatcgaacaccagatcgagacggcctactcgcgcacg
gtcacgctgccctcgggcggcgccatcgtcatcgaccacaccgaagccctggtttccgtg
gacgtcaactcggcccgctccacgcgcggcgccgatatcgaggaaaccgcgctgcgcacc
aactcggaagccgccgacgaagtggcccgtcagttgcgcctgcgcgacctgggcggcctg
atcgtcatcgacttcatcgacatggaggacagcaagaaccagcgcgccgtcgaacagcgc
ctgcgtgacgccctccacttcgaccgcgcccgcgtccagatgggcaagatttcgcgcttc
ggcctgatggaactgtcgcgccagcgcctgcgccccgccctgaacgaaggctcgcacatc
acctgcccgcgctgcaacggcaccggcgtgatccgcgacgccgagtccagcgccctgcac
gtgctgcgcctgctgcaggaagaggccatgaaggaaaacaccgccgccgtgcacgcccaa
gtgccggtcgacgttgcgacctatctgctgaacgaaaagcgcgctgacatcaccaagatg
gaagcccgcctcaaggtcaacctgatgctgatccccaacaagcatctggaaacgccgcac
caccacatcgagcgcctgcgccacgacgatccgcgcctggaagaactgaagaccagcttc
gaactggttgaagccccggccacggacgctccctggcagccgcgcgagcacgaaatcaag
tcgcgtccggaagcgctggtcaagggcatcacgccctcgcagcccgctccggtttcgacg
cccgcccccgcgccggctcccgcgccggcggcaaccggcggcctgggcggcctgttcaag
cgcctgttcggctggctgggcggcagctccgaagcggccaagcccgctcccgccgcccag
gaagacagcgccaagcgcgccagctccggccgcggcaagggccgcagcggccatgacggc
caggaacgccgtggcgaacgccatggttcggaccgcaaccgcaaccgccgcggcgaatcg
cgcggcgaaggcgccgaggccagcgaaggcggccgccaccacgtgcgcggcaaccgccgt
gccgagggcgaccgccaggaacgcggcgaccgcaataaccgcaacgacgcccgcggcgaa
cgcgacacccaggccacgcaagcggccctggcgtccaaccgtcccgagcaagccgtggaa
gccggcggcgaggacagcggcgccggccgcaaccgccgccgtggccgtggccgcaaccgc
cgcgaggaaggccagtccgacgccccgatgagcgaacaggaaagcatggtcgccgccctg
gctcaaacggtcgccactgccctgcccgagaccaaaccggctcctgaagccgccgtggtg
accgccgaggctgtcgaagccgaagccgtggctgaacagaccgccgatggcgtacccgcc
gtggaaggcgccgaaggcgctgccgatcccgagcgcaagcgccgccgccgccgcagccgc
cgcggccgccgcagccaggaagaagcaggtttggccggcagcgacgatcagcaggaagat
ggcgccgacgacgacagcatcgatcagccggaagaagccgccgctcaacccgccgtgacc
gctgcgcaagccgtggaacctgccgtacaggtccaagccgctccggtgcaagcccagcag
cccgaaaccgctaaggccgagcccgcccaggttgcggctgccccggttgcggctgctccg
gttgaagcccagccggcaacgcccgtgcaggtccaagccgagcaagccgtcgaacccgtg
gcccaacccgtgcagacggctgccgccgaggtgacccagcctgtgtccgtgcaggccgcg
agcgaggcttccgcccccgcagcgaccgagacgacgccggtggaagccgccgccgtcgag
cccgtggttgctcccgccgccgcgccggccgccccggttgctcctgccgcgcctgtggca
ccggaagcggctgccccggcacccgcagccagccagcccatcgtgctgccggctgccgcc
ccgtcggccaaggctcaggccctgcacgacgtggtgaacgccgccggcctgcagtgggtg
gagaccgatccggaccgccacgcccagacccagctgcgtatcgccgctgcacacacgccg
gtccgcctgggccgcgagcgcaagccggtcgcgcccgtttccaacgaaccgctggttcag
gtcgaaacgcgccactaa
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