Aureococcus anophagefferens: AURANDRAFT_20948
Help
Entry
AURANDRAFT_20948 CDS
T04134
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aaf
Aureococcus anophagefferens
Pathway
aaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AURANDRAFT_20948
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aaf03041
]
AURANDRAFT_20948
Enzymes [BR:
aaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AURANDRAFT_20948
Spliceosome [BR:
aaf03041
]
Complex C
Other components
Step II factors
AURANDRAFT_20948
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_N
AAA_22
AAA_25
AAA_29
FtsK_SpoIIIE
AAA_7
wHTH-PRTase_assc
nSTAND1
ATPase
Sigma54_activat
nSTAND3
Motif
Other DBs
NCBI-GeneID:
20219377
NCBI-ProteinID:
XP_009033810
JGI:
Auran1_20948
UniProt:
F0Y016
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MASKRAPTTTLPKAKKKKPKEVFANLVPRTARGVAVDPSLPVLAARDEILAAVKAHATVL
LVGETGSGKSTQVPRFLVEAGLGSGARGARVCVTQPRRVAVLTVCQRVADERGCAVGEAV
GYAMRFERRVSPATAVKFATDGLVIRECLRDPRLSDYACVVVDEAHERALHTDVLCGLVR
RAARARRASPRPLRVLLMSATLDVAAFSGFFDDAAVVRVPGRAHPVDVFYTAAAVDDYAE
AAVACCLQLHGDPACGGDVLVFMPGEQEIRELVHILDDALRGAAPSLVVPLYGALPREDQ
LRAFAPAPGRRKFVVATTIAETSVTIGGVRHVVDPGLVKARATSTTGFESLKLAPTSKAQ
ARQRAGRAGREAPGRCYRLYPEASWAALADDVTPEILRCDLAAVVLQLKALGVDRPETFD
YVSRPPRAALLRALETLHAVGALDDAGTLTARGARLAKLPLVPVLAKALDGAAEDDRYAP
GADAVLTIVAVVAASDHGVFATPSRSEEADDAIRARDAFEDVSGDLLTARNAYDACARES
TPANRGAWCRRRYVSATAMHTAFRVRAQLAGLFPDGAFSRDAAADADARRAATLDCLAGA
LCSCHAALRDPHRRCFRAARQKVDVFVHPTSVLHGRNPPPDALVYTSSVLTTKLFVRGVL
AVDAAALPRLAPHLFSTKGT
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaagcgggcgccaacgacgacgctaccgaaggccaaaaagaagaagccgaag
gaggtcttcgcgaacctcgtgccgcgcacggcgcggggcgtcgccgtggacccgtcgctg
cccgtgctcgccgcgcgcgacgagatcctcgcggcggtcaaggcgcacgcgacggtgctc
ctcgtcggcgagacgggcagcggcaagtcgacgcaggtgccgcggttcctcgtcgaggcc
ggcctcggctccggcgcgcggggcgcgcgcgtctgcgtcacgcagccgcggcgcgtcgcg
gtgctcacggtctgccagcgcgtcgccgacgagcggggctgcgccgtcggcgaggccgtg
ggctacgccatgcgcttcgagcgccgggtgtcgcccgcgacggccgtcaaattcgcgacg
gacggcctcgtgatccgcgagtgcctccgggaccctcggctgtccgactacgcgtgcgtc
gtcgtcgacgaggcccacgagcgcgcgctgcacacggacgtgctctgcggcctcgtgcgg
cgcgcggcccgggcgcggcgcgcgtcgccgaggcccctgcgggtcctcctcatgtccgcg
acgctcgacgtcgccgccttctccggcttcttcgacgacgcggccgtcgtccgcgtgccc
gggcgggcccatcccgtcgacgtcttctacacggcggcggccgtcgacgactacgccgag
gccgccgtcgcctgctgcctccagctccacggcgacccggcgtgcggcggcgacgttctg
gtgttcatgcccggcgagcaggagatccgcgagctcgtccacatcctcgacgacgcgctc
cgcggggcggcgccgtccctcgtcgtcccgctctacggcgcgctgccccgcgaggaccag
ctccgcgccttcgcgccggcgccgggccggcggaagttcgtcgtcgcgacgacgatcgcg
gagacgtccgtgaccatcggcggcgtgcgccacgtcgtcgacccgggcctcgtcaaggcc
cgcgcgacgtcgaccacgggcttcgagtccctcaagctggcgccgacgtccaaggcccag
gcgcggcagcgcgcgggccgcgcgggccgcgaggcgcccggccgctgctaccgcctctac
ccggaggcgtcctgggcggcgctcgccgacgacgtgacgccggagatcctgcgctgcgac
ctcgcggccgtcgtcctccagctcaaggccctcggcgtcgaccggccggagaccttcgac
tacgtgtcgcgcccgcccagggccgcgctgctccgcgcgctcgagacgctccacgccgtc
ggcgccctcgacgacgccggaacgttaacggcccgcggcgcgcgcctcgcgaaactgccg
ctcgtgcccgtcctcgccaaggcgctcgacggcgccgcggaggacgaccgctacgcgccg
ggcgcggacgccgtgctgacgatcgtcgcggtcgtcgcggcgtcggaccacggcgtcttc
gcgacgccgtcccggtccgaggaggccgacgacgccatccgcgcgcgcgacgccttcgag
gacgtctcgggcgacctcctcacggcgcggaacgcctacgacgcgtgcgcgcgggagtcg
acgccggcgaaccggggcgcctggtgccgcaggcgctacgtgtccgcgacggccatgcac
acggccttccgcgtccgcgcccagctcgcggggctcttccccgacggcgcgttctcccgc
gacgccgccgcggacgcggacgcgcggcgcgcggcgacgctcgactgcctcgcgggcgcg
ctctgcagctgccacgcggcgctccgggacccgcaccgccggtgcttccgcgccgcgcgc
cagaaggtcgacgtcttcgtccacccgacgtccgtcctccacggccggaacccgccgccg
gacgcgctcgtctacacgtcctccgtcctcacgacgaagctcttcgtccgcggcgtcctc
gccgtcgacgccgccgcgctcccgaggctcgcgccccacctgttctcgacgaaggggacg
taa
DBGET
integrated database retrieval system
