KEGG   Aureococcus anophagefferens: AURANDRAFT_25994
Entry
AURANDRAFT_25994  CDS       T04134                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
aaf  Aureococcus anophagefferens
Pathway
aaf03018  RNA degradation
aaf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aaf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AURANDRAFT_25994
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AURANDRAFT_25994
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aaf03019]
    AURANDRAFT_25994
   03041 Spliceosome [BR:aaf03041]
    AURANDRAFT_25994
Messenger RNA biogenesis [BR:aaf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     AURANDRAFT_25994
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     AURANDRAFT_25994
Spliceosome [BR:aaf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    AURANDRAFT_25994
SSDB
Motif
Pfam: LSM SM-ATX SHOCT-like_DUF2089-C
Other DBs
NCBI-GeneID: 20220136
NCBI-ProteinID: XP_009036479
JGI: Auran1_25994
UniProt: F0Y7P1
LinkDB
Position
Unknown
AA seq 139 aa
MLPLSLLTTAKGQPMLIELKNGDTYNGRLVSADTWMNVNLEEVICTSRDGDRFWKLKECY
IRGNSIKYLRIPDEIIDLVQEEEISAKDAKKGGKGGRGRVNTSGRGRGRGKGGKGKGRGR
GDSGGKAGGRGGGRGGRGA
NT seq 420 nt   +upstreamnt  +downstreamnt
atgctgccgctgagcctcttgacgacggccaagggccagccgatgctcatcgagctcaag
aacggcgacacctacaacgggcgcctcgtgagcgccgacacgtggatgaacgtgaacctc
gaggaggtcatctgcacgagccgcgacggcgaccgcttctggaagctcaaggagtgctac
atccgcggcaacagcatcaagtatttacgcatccccgacgagatcatcgacctcgtccag
gaggaggagatctccgccaaggacgcgaagaagggcggcaagggcggccggggccgcgtc
aacacgtcgggccgcggccggggccggggcaagggcggcaagggcaagggccggggccgc
ggcgactcgggcggcaaggcgggcggccgcggcggcggccgcggggggcgcggcgcctga

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