Aureococcus anophagefferens: AURANDRAFT_268
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Entry
AURANDRAFT_268 CDS
T04134
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aaf
Aureococcus anophagefferens
Pathway
aaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AURANDRAFT_268
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaf03019
]
AURANDRAFT_268
03041 Spliceosome [BR:
aaf03041
]
AURANDRAFT_268
03009 Ribosome biogenesis [BR:
aaf03009
]
AURANDRAFT_268
03016 Transfer RNA biogenesis [BR:
aaf03016
]
AURANDRAFT_268
Enzymes [BR:
aaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AURANDRAFT_268
Messenger RNA biogenesis [BR:
aaf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
AURANDRAFT_268
Spliceosome [BR:
aaf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
AURANDRAFT_268
Complex C
U4/U6.U5 tri-SnRNP related factors
AURANDRAFT_268
Ribosome biogenesis [BR:
aaf03009
]
Eukaryotic type
Pre-60S particles
Helicases
AURANDRAFT_268
Transfer RNA biogenesis [BR:
aaf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
AURANDRAFT_268
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
ResIII
MTR4-like_stalk
nSTAND3
Motif
Other DBs
NCBI-GeneID:
20220259
NCBI-ProteinID:
XP_009036848
JGI:
Auran1_268
UniProt:
F0Y925
LinkDB
All DBs
Position
Unknown
AA seq
916 aa
AA seq
DB search
AKTYAFPLDGFQAKAVECIDRDESVLVSAHTSAGKTVCAEYAIAKSLRDGQRVIYTSPIK
ALSNQKFRDLQEEFQDVGLMTGDITINPSAKCLVMTTEILRSMLYRGSEVMREVKWVVYD
EIHYMRDKERGVVWEESIILLPHSVRFVFLSATIPNSVQFASWIAVTHRQPCHVVYTDYR
PTPLVHYVFAAGGEGLHLVVDEKGAFKEANFEKAMAQLTAGDDPSAPKSAQSGPAKKKRG
GNSKQQDDDLKRIIGLIVEKDMAPAIIFAFSKNQCEANAVAMKKMDFNTDEERDVVDAVY
GSAMESLSEEDRGLPQVKTLLPLLKRGVGIHHGGLLPIVKEVVEILFQEGLLKILFATET
FAIGINMPAKTVVFTETRKFDGKDFRWLSAGEYIQMSGRAGRRGKDDKGTVIQILDEKME
PQVAKDILYGGADALDSSYHVTYNMLLNLLRVEGADPDYLVRSSFHQYQQEADAPQILER
AAAAQAGADAQSFDDAADVARTRKHVDVAAALAATRRRALVLARKPKHCLQWLQPGRVAA
VAFASEADGVACGALAATQECLETRPSHVAEVLVRCAADAPLEAPAPRGDGPDEGRVVVV
PLVALASLSAIRVYMPQDLRKPQERAKLRTSVVEVEKRFGGDGGEPLPTLRDDDDLKLAA
REPEYAAVAAQERALVAELAAHPPGATVPVDAFAARQALVDEARALRKAAAEAQELVLRD
DLRRMRKVLKRLGHVSLDAVIALKGRAACELNTADELVIAELLLDGVFGDLEPPVIAALL
SCMVFGEKRKGDAGPPNVRKQLLAPFAKLQAAAKLVGKAMHDAKIAVDVDEYVDKFNPDM
MELLFEWANGAKFVDVMKVTDAFEGTVIRVIRRLDELLRQLASAAFAIGAFELKGKFEDA
SAAIKRDIVFAASLYL
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
gcgaagacgtacgcgttcccgctcgacgggttccaggccaaggccgtcgagtgcatcgac
cgcgacgagagcgtgctcgtgtcggcccacacgtccgcgggcaagacggtctgcgccgag
tacgcgatcgcgaagtcgctccgcgacggccagcgcgtcatctacacgtcgccgatcaag
gcgctgagcaaccagaagttccgcgacctccaggaggagttccaggacgtcggcctcatg
acgggcgacatcacgatcaacccgagcgccaagtgcctcgtgatgacgacggagattttg
cggtcgatgctctaccgcgggtccgaggtcatgcgcgaggtcaagtgggtcgtctacgac
gagatccactacatgcgcgacaaggagcgcggcgtcgtctgggaggagagcatcatcctg
ctgccccactccgtgcgcttcgtcttcctgtcggcgacgatcccgaacagcgtgcagttc
gcgtcgtggatcgccgtcacgcaccgccagccgtgccacgtcgtctacacggactaccgg
ccgacgcccctggtccactacgtcttcgccgcgggcggcgagggcctgcacctcgtcgtc
gacgagaagggcgccttcaaggaggcgaacttcgaaaaggcgatggcgcagctcaccgcg
ggcgacgacccgtccgcgcccaagtccgcgcagtccggcccggcgaagaagaagcgcggc
ggcaacagcaagcagcaggacgacgacctgaagcgcatcatcggcctcatcgtcgagaag
gacatggcgccggcgatcatcttcgcgttctccaagaaccagtgcgaggcgaacgccgtc
gcgatgaagaagatggacttcaacacggacgaggagcgcgacgtcgtcgacgccgtctac
gggtcggccatggagagcctgagcgaggaggaccggggcctgccgcaggtgaagacgctg
ctcccgctgctcaagcgcggcgtcggcatccaccacggcggcctgctgcccatcgtcaag
gaggtcgtcgagatcctattccaggagggcctgctgaagatcttgttcgccacggagacc
ttcgccatcggcatcaacatgcccgcgaagaccgtcgtcttcacggagacgcggaagttc
gacggcaaggacttccggtggctcagcgcgggcgagtacatccagatgagcggccgcgcg
gggcggcgcggcaaggacgacaagggcacggtgatccagattttggacgagaagatggag
ccccaggtcgccaaggacatcttgtacggcggcgcggacgcgctcgactcgagttaccac
gtgacctacaacatgctgctgaacctgctgcgcgtcgagggcgcggacccggactacctc
gtgcggtcgtccttccaccagtaccagcaggaggccgacgcgccccagatcctcgagcgg
gccgcggccgcgcaggccggcgccgacgcgcagagcttcgacgacgccgcggacgtcgcg
cggacgaggaagcacgtcgacgtcgccgcggccctcgcggcgacgcggcggcgggccctc
gtgctcgcgcgcaagcccaagcactgcctccagtggctccagccgggccgcgtcgccgcg
gtcgccttcgcgtccgaggccgacggcgtcgcctgcggcgcgctcgcggcgacgcaggag
tgcctcgagacgcggccgtcgcacgtcgccgaggtcctcgtgcgctgcgcggccgacgcg
cccctcgaggcgccggcgccgcgcggcgacgggcccgacgaggggcgcgtggtcgtcgtg
ccgctcgtggccctcgcgagcctcagcgcgatccgcgtctacatgccccaggacctccgg
aagccgcaggagcgcgcgaagctgcggacgtcggtcgtcgaggtcgagaagcgcttcggg
ggcgacggcggggagcccctgccgacgctgcgcgacgacgacgacctcaagctcgccgcg
cgggagcccgagtacgccgccgtcgcggcgcaggagcgcgcgctcgtcgcggagctcgcg
gcgcacccgccgggcgccacggtgcccgtcgacgccttcgcggcgcgccaggccctcgtc
gacgaggcgcgggccctgcgcaaggccgccgcggaggcgcaggagctcgtgctccgcgac
gacctccggcgcatgcgcaaggtcctgaagcggctgggccacgtgtcgctcgacgccgtc
atcgccctcaagggccgcgcggcctgcgagctcaacacggccgacgagctcgtcatcgcc
gagctcctgctcgacggcgtcttcggcgacctcgagccgccggtcatcgccgcgctcctg
tcctgcatggtcttcggcgagaagcgcaagggcgacgcggggccgcccaacgtccgcaag
cagcttttagcgcccttcgccaagctccaggccgcggcgaagctcgtgggcaaggccatg
cacgacgcgaagatcgccgtcgacgtcgacgagtacgtcgacaagttcaacccggacatg
atggagctcctcttcgagtgggccaacggcgccaagttcgtcgacgtcatgaaggtcacg
gacgccttcgagggcacggtgatccgcgtcatccgccgcctcgacgagctcctccgccag
ctcgcgtccgcggcgttcgcgatcggcgccttcgagctcaagggcaagttcgaggacgcg
tccgcggccatcaagcgcgacatcgtcttcgccgcgagcctgtacctc
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integrated database retrieval system
