KEGG   Aureococcus anophagefferens: AURANDRAFT_33181
Entry
AURANDRAFT_33181  CDS       T04134                                 
Name
(RefSeq) hypothetical protein
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
aaf  Aureococcus anophagefferens
Pathway
aaf03018  RNA degradation
aaf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aaf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AURANDRAFT_33181
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AURANDRAFT_33181
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aaf03019]
    AURANDRAFT_33181
   03041 Spliceosome [BR:aaf03041]
    AURANDRAFT_33181
Messenger RNA biogenesis [BR:aaf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     AURANDRAFT_33181
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     AURANDRAFT_33181
Spliceosome [BR:aaf03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    AURANDRAFT_33181
SSDB
Motif
Pfam: LSM DUF150_C
Other DBs
NCBI-GeneID: 20221262
NCBI-ProteinID: XP_009041305
JGI: Auran1_33181
UniProt: F0YLJ8
LinkDB
Position
Unknown
AA seq 103 aa
MASKSIIDLEKCIDKEVRVKFQGGREVRGVLKGFDQLVNIVLDNCVESMHGASARAHPDD
PYRLTDKTRKLGLVVCRGLQVSLVSPVDGMEEIANPFIQHSEI
NT seq 312 nt   +upstreamnt  +downstreamnt
atggcgtcgaagtcgatcatcgacctcgagaaatgcatcgataaagaagtccgcgtgaaa
ttccagggcggccgcgaagtgcgcggcgtcctcaagggcttcgaccagctcgtgaacatc
gtcctcgacaactgcgtcgagtccatgcacggcgcgtccgcccgcgcccaccccgacgac
ccgtaccgcctcacggacaagacgcggaagctcggcctcgtcgtctgccgagggctccag
gtgagcctcgtgtcgcccgtcgacggcatggaggagatcgcgaacccgttcatccagcac
tccgagatctag

DBGET integrated database retrieval system