Aureococcus anophagefferens: AURANDRAFT_35236
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Entry
AURANDRAFT_35236 CDS
T04134
Name
(RefSeq) hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
aaf
Aureococcus anophagefferens
Pathway
aaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AURANDRAFT_35236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaf03019
]
AURANDRAFT_35236
03036 Chromosome and associated proteins [BR:
aaf03036
]
AURANDRAFT_35236
Enzymes [BR:
aaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AURANDRAFT_35236
Messenger RNA biogenesis [BR:
aaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
AURANDRAFT_35236
mRNA degradation factors
5'-3' decay
Decapping complex
AURANDRAFT_35236
Chromosome and associated proteins [BR:
aaf03036
]
Eukaryotic type
Gene silencing
piRNA pathway
AURANDRAFT_35236
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_19
CMS1
ERCC3_RAD25_C
DS
Motif
Other DBs
NCBI-GeneID:
20221574
NCBI-ProteinID:
XP_009042837
JGI:
Auran1_35236
UniProt:
F0YQZ6
LinkDB
All DBs
Position
Unknown
AA seq
365 aa
AA seq
DB search
MHPSADDDETWRDNLQLPTKDTRYQTEDVTLTRGQEFEDYFLKRELLMGIFEKGFERPSP
VQERAIPIILQNRNVLARAKNGTGKTAAFIIPCLEKTDPSKKFIQVLILIPTRELALQTS
AVVRELGKHMKVECMVSTGGTSLKDDIMRLYKPVHVLVGTPGRILDLSEKGVAALGRCHT
VIMDEADKLLSPEFEPLLEKLVHHCSPERQICLFSATFPVTVKNFKEKFIHNPYEINLMD
DLTLKGITQFYAFVEERQKVHCLHTLFTKLEINQSVIFCNSVNRVELLAKKITELGYSCF
YIHAKMQQSHRNRVFHEFRNGSTRHLVSSDLFTRGIDIQSVNVVINFDFPKTSETYLHRI
GRAGR
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgcatccttcagcagatgatgatgagacgtggcgcgacaacttgcaactaccaactaag
gacactcgataccaaactgaagatgtaactctaacgcgagggcaggaatttgaggactac
tttctgaagcgcgagctcttgatgggcatatttgagaaggggtttgagcgaccctcgcct
gtccaggagagagcgattccgattatactccagaaccgaaacgttctcgcacgtgctaag
aatgggactggcaagactgcagcgttcattattccctgcctcgagaaaacagacccctcg
aaaaaatttatacaagtgctcatcctaatcccaactcgggaacttgcacttcaaacatca
gctgtagtccgtgaacttgggaaacacatgaaagttgagtgcatggtatccactggtggg
acctccctgaaggatgacattatgcgtctatacaagcctgtccacgtacttgtcggcacg
ccagggcgcattcttgacttatcagagaagggcgtcgcagcattgggtcgctgccatacg
gtcattatggatgaagctgacaagctgctttcgccggagtttgagcccctcctggaaaaa
ctcgtgcaccactgctcccccgagcgccagatctgtctcttttcagcgacgttccctgtt
acggtgaaaaatttcaaggaaaaattcatccacaatccctacgaaattaatctcatggat
gatctcacgctaaaaggcataacccagttttatgcttttgttgaggaaagacaaaaggtg
cattgcctacatacactattcaccaagcttgagattaatcagtcagtcattttttgcaac
tcagtcaaccgtgtggaattactcgccaaaaagatcaccgaactcggctactcgtgcttt
tacatccacgctaagatgcagcaatcgcatcgtaatcgcgtcttccacgagttccgcaat
ggctctactcgtcacctcgtttcctccgacctcttcacacgtggtattgacattcagtcc
gttaatgttgtcatcaattttgactttccaaagacgtctgaaacctatctgcatcgcatt
gggcgtgcaggtcgc
DBGET
integrated database retrieval system
