Aureococcus anophagefferens: AURANDRAFT_52520
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Entry
AURANDRAFT_52520 CDS
T04134
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aaf
Aureococcus anophagefferens
Pathway
aaf03013
Nucleocytoplasmic transport
aaf03015
mRNA surveillance pathway
aaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AURANDRAFT_52520
09122 Translation
03013 Nucleocytoplasmic transport
AURANDRAFT_52520
03015 mRNA surveillance pathway
AURANDRAFT_52520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaf03019
]
AURANDRAFT_52520
03041 Spliceosome [BR:
aaf03041
]
AURANDRAFT_52520
Enzymes [BR:
aaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AURANDRAFT_52520
Messenger RNA biogenesis [BR:
aaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AURANDRAFT_52520
Spliceosome [BR:
aaf03041
]
Complex C
Other components
EJC/TREX
AURANDRAFT_52520
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
AURANDRAFT_52520
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
20222206
NCBI-ProteinID:
XP_009033759
JGI:
Auran1_52520
UniProt:
F0XZR0
LinkDB
All DBs
Position
Unknown
AA seq
459 aa
AA seq
DB search
METAAAGPVCDARFVRARAFFAVTLTMADEADKEIADDDLVDYDDDDVEEQGGDEAKEAK
KGHYVGIHASGFRDFILKPECLRAVVDCGFEHPSEVQHECIPQAVLGMDIICQAKSGMGK
TAVFVLATLHQLEPVDGEISVLVMCHTRELAFQIKNEYARFSKYLPAVKVEVFYGGVPIT
QNKAALKANTPHIVVGTPGRILGLVKSKDLVLGKLKHFVMDECDRMLEALDMRKDIQEIF
RTTPHQKQVMMFSATLSKEIRPVCKKFCQDPMEIYVDDDTKLTLHGLQQYYVKLQEAEKN
RKLNDLLDALDFNQVVIFVSKVARATELDRLLCECNFPSVCIHSGMTQEERITRYKDFKD
FKKRILVSTDLFGRGIDIERVNIVINYDFPEVKEGAAQTTASDQYLHRVGRAGRFGTKGL
SISFISSKEDAEILAAVQSRFEVNVSELPDQIDISSYMS
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggaaacggccgccgccggcccggtatgtgacgcgcggtttgttcgagcgcgcgcgttt
ttcgcagttacgttgaccatggccgacgaagcggacaaggagatcgcggacgacgacctc
gtcgactacgacgacgacgacgtcgaggagcaggggggcgacgaggccaaggaggcgaag
aagggccactacgtcggcatccacgcgtcgggcttccgcgacttcatcctcaagcccgag
tgcctccgcgcggtcgtcgactgcggcttcgagcacccgtccgaggtgcagcacgagtgc
atcccccaggccgtgctcggcatggacatcatctgccaggccaagagcggcatgggcaag
acggccgtcttcgtcctcgcgacgctccaccagctcgagcccgtcgacggcgagatctcc
gtgctcgtcatgtgccacacgcgcgagctcgcgttccagatcaagaacgagtacgcgcgg
ttctcgaaatacctgccggccgtcaaggtcgaggtcttctacggcggcgtgccgatcacg
cagaacaaggcggcgctcaaggcgaacacgccccacatcgtcgtcggcacgcccggccgc
atcctggggctcgtcaagtccaaggatctcgtgctcggcaagctcaagcactttgtgatg
gacgagtgcgaccgcatgctcgaggcgctcgacatgcgcaaggacatccaggagatcttc
cgcacgacgccccaccagaagcaggtcatgatgttcagcgcgacgctctccaaggagatc
cggcccgtgtgcaagaagttctgccaggaccccatggagatctacgtcgacgacgacacg
aagctcacgctccacggcctccagcagtactacgtcaagctccaggaggcggagaagaac
cgcaagctcaacgacttgttggatgccctcgacttcaaccaggtcgtcatcttcgtgtcc
aaggtcgcgcgcgcgacggagctcgaccgcctcctctgcgagtgcaacttcccctccgtg
tgcatccacagcggcatgacccaggaggagcgcatcacgcgctacaaggacttcaaggac
ttcaagaagcgcatcctcgtgtccacggacctcttcggccgcggcatcgacatcgagcgc
gtcaacatcgtcatcaactacgacttccccgaggtcaaggagggcgccgcgcagacgacg
gcgagcgaccagtacctccaccgcgtcggccgcgccggccgcttcggcaccaagggcctc
tccatctccttcatctcctccaaggaggacgcggagatcctcgcggccgtccagagccgc
ttcgaggtcaacgtctccgagctgccggaccagatcgacatctcctcctacatgtcctag
DBGET
integrated database retrieval system
