Aureococcus anophagefferens: AURANDRAFT_53512
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Entry
AURANDRAFT_53512 CDS
T04134
Name
(RefSeq) hypothetical protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aaf
Aureococcus anophagefferens
Pathway
aaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AURANDRAFT_53512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaf03019
]
AURANDRAFT_53512
03041 Spliceosome [BR:
aaf03041
]
AURANDRAFT_53512
Messenger RNA biogenesis [BR:
aaf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
AURANDRAFT_53512
Spliceosome [BR:
aaf03041
]
Complex B
Other components
Prp19-related factors
AURANDRAFT_53512
Complex C
AURANDRAFT_53512
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_8
TPR_15
Mad3_BUB1_I
TPR_2
TPR_12
TPR_1
RPN7
TPR_CcmH_CycH
DUF5575_C
TPR_16
TPR_10
TPR_7
TPR_4
Motif
Other DBs
NCBI-GeneID:
20222307
NCBI-ProteinID:
XP_009036225
JGI:
Auran1_53512
UniProt:
F0Y7N0
LinkDB
All DBs
Position
Unknown
AA seq
884 aa
AA seq
DB search
MPATPAQRLEALLAGVDHCAHEAEVTRNPFSVKAWLAYLEAKNDSAHGERRLIFERALRL
VPRSYKLWYAYLGELEVAVRDRWTTSGRAKTLVGAYERALLSCNKFPRIWLDYLACLRKM
GLGSEVRRAFDRCLMALPITQHHHVWPEFVEWASEFGVVEAAVIAHRRWVMYEPNGREAF
VDYLAAQGRHGDAIVELVKICEDDDFASPSGKSRHQLWMRLCDLCAAHPEAAPRSLDVDA
LIRSGLARFTDEVGKLWCKLADYYIRLGDFEDARDVYEEAVTTVVTVRDFSLAFDAYAQF
EESVIAAKMKLLEDGGGDSEEEEAPPDIGTFRVTDELDLELRLARLERLMTRRPLLLSSV
VLRQNPHNVKEWHARAALVADDPAEAVACYGDAVKTVDPARATGKVESLWIAFARYYEDR
GDLANARVVFDKACAADFRGADDLAAVYCAWAEMELRGGHHDAALDVARRACVEPPALAR
RRRGGGGAAAAAADRVHRNPKVWALYLDLEESLGTLEEARAAYDRCLELKVATPAIVLNY
ARMLDDAGYHEASFGAYERGVALFRWPHVRELWSAYLGAFVARFGGSKLERARDLYEQAL
RKAPPADAAKLYVDYAKLEETHGLARRAAAVYERAAQAAPDEAQFDAYALYAAKVERAFG
AAKARPVYEAAVAALRRDGDVTRMCLKFAALERALGEVDRARGVLAHGAQFADPNLDDHY
WATWRDFEVHHGNEDTFRDMLRVKRSVETARSGAVYAADNLLKTDMPVMTDAEARAKLDG
GGAGDDAGRGVKRGADEGGAAETEMEALERQAARIVDAAAAAPQAKAADPNEIDLDDDDD
DDEGEGTLVGLAVKPIPAAVFGSAADQRGEEADVGALARFRAKA
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcgacgcccgctcagcgcctcgaggcgctgctcgcgggcgtggaccactgcgcc
cacgaggcggaggtgacgcggaaccccttcagcgtcaaggcctggctcgcgtacctcgag
gcgaagaacgacagcgcgcacggcgagcggcggctcatcttcgagcgcgcgctccggctc
gtgccgcggagctacaagctctggtacgcgtacctcggcgagctcgaggtcgccgtgcgc
gaccgctggacgacgagcggccgcgcgaagacgctcgtcggcgcctacgagcgcgcgctc
ctgtcgtgcaacaagttcccgcggatctggctcgactacctcgcgtgtctacggaagatg
ggcctcgggagcgaggtgcggcgcgccttcgaccgctgcctcatggcgctgccgatcacg
cagcaccaccacgtctggcccgagtttgtggaatgggcgtcggagttcggcgtcgtcgag
gccgcggtcatcgcgcaccggcgctgggtcatgtacgagcccaacggccgcgaggccttc
gtggactacctcgcggcccagggccgccacggcgacgccatcgtcgagctcgtcaagatc
tgcgaggacgacgacttcgcctccccgtcgggcaagagccggcaccagttgtggatgcgg
ctctgcgacctctgcgcggcgcaccccgaggccgcgccgcggtccctggacgtggacgcg
ttgattcgcagcggcctcgcgcgcttcacggacgaggtgggcaagctctggtgcaagctc
gcggactactacatccgtttgggcgacttcgaggacgcgcgcgacgtctacgaggaggcc
gtgacgacggtcgtcacggtgcgcgacttctccctggcgttcgacgcctacgcccagttc
gaggagagcgtcatcgcggcgaagatgaaattgctggaggacggcggcggcgactccgag
gaggaggaggcgccgcccgacatcggcacgttccgcgtcacggacgagctcgacctcgag
ctgcgcctcgcgcgcctcgagcgcctcatgacgcggcggccgctgctcttgagctccgtc
gtgctgcgccagaacccgcacaacgtcaaggagtggcacgcgcgcgccgcgctcgtcgcc
gacgaccccgcggaggccgtcgcgtgctacggcgacgcggtcaagaccgtggacccggcg
cgggccacgggcaaggtcgaatcgctgtggatcgccttcgcgcgctactacgaggaccgc
ggcgacctggcgaacgcgcgcgtcgtcttcgacaaggcgtgcgcggcggactttcgcggc
gcggacgacctcgcggccgtctactgcgcgtgggcggagatggagctgcggggcggccac
cacgacgcggcgctcgacgtcgcgcggcgcgcctgcgtcgagccgccggcgctcgcgcgg
cggcgccgcggcggcggcggcgccgccgcggcggcggccgaccgcgtgcaccgcaacccc
aaggtctgggcgctctacctcgacctcgaggagtccctgggcacgctcgaggaggcgcgc
gcggcctacgaccgctgcctcgaattgaaggtcgcgacgccggccatcgtcctcaactac
gcgcgcatgctcgacgacgccggttaccacgaggcgtccttcggcgcctacgagagaggc
gtcgcgctcttccgctggccccacgtgcgcgagctctggtccgcctacctcggcgccttc
gtggcgcgcttcggcggctcgaaattggagcgcgcgcgcgacctctacgagcaggcgctc
cggaaggcgccgcccgcggacgcggcgaagctctacgtcgactacgcgaagctcgaggag
acgcacggcctcgcgcggcgcgccgccgccgtctacgagcgcgcggcccaggccgcgccg
gacgaggcccagttcgacgcctacgcgctctacgcggcgaaagtggaacgcgcgttcggc
gccgccaaggcgcggcccgtctacgaggccgccgtcgccgcgctccgccgcgacggcgac
gtcacgcgcatgtgcctcaagttcgcggcgttggagcgggcgctcggcgaggtcgaccgc
gcgcgcggcgtgctcgcgcacggcgcgcagttcgccgacccgaacctcgacgaccactac
tgggcgacgtggcgcgacttcgaggtgcaccacggcaacgaggacacgttccgcgacatg
ctgcgcgtgaagcggtccgtggagacggcgcggagcggcgcggtctacgcggcggacaac
ctcctcaagacggacatgcccgtgatgacggacgcggaggcgcgcgcgaagctcgacggc
ggcggcgccggcgacgacgcgggccgcggcgtcaagcgcggcgcggacgagggcggcgcg
gcggagacggagatggaggcgctcgagcgccaggccgcgcgcatcgtcgacgccgcggcc
gccgcgccgcaggccaaggccgcggaccccaacgagatcgacctcgacgacgacgacgac
gacgacgagggcgaggggaccctcgtgggcctcgcggtgaagcccatccccgccgccgtc
ttcggctccgccgcggaccagcgcggcgaggaggcggacgtcggcgcgctcgcgcgcttc
cgcgccaaggcgtaa
DBGET
integrated database retrieval system
