Aureococcus anophagefferens: AURANDRAFT_55101
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Entry
AURANDRAFT_55101 CDS
T04134
Name
(RefSeq) hypothetical protein
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
aaf
Aureococcus anophagefferens
Pathway
aaf03040
Spliceosome
aaf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
aaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AURANDRAFT_55101
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
AURANDRAFT_55101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aaf03041
]
AURANDRAFT_55101
04121 Ubiquitin system [BR:
aaf04121
]
AURANDRAFT_55101
03400 DNA repair and recombination proteins [BR:
aaf03400
]
AURANDRAFT_55101
Enzymes [BR:
aaf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
AURANDRAFT_55101
Spliceosome [BR:
aaf03041
]
Complex B
Other components
Prp19 complex
AURANDRAFT_55101
Complex C
Prp19-CDC5 complex
AURANDRAFT_55101
Ubiquitin system [BR:
aaf04121
]
Ubiquitin ligases (E3)
U-box type E3
AURANDRAFT_55101
DNA repair and recombination proteins [BR:
aaf03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
AURANDRAFT_55101
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Prp19
WD40_Prp19
Beta-prop_EML_2
zf-Nse
Beta-prop_WDR5
Beta-prop_THOC3
U-box
DUF6674
Beta-prop_WDR3_1st
DSE1_N
GPG1
WD40_MABP1-WDR62_1st
WD40_WDHD1_1st
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
20222480
NCBI-ProteinID:
XP_009040599
JGI:
Auran1_55101
UniProt:
F0YJN6
LinkDB
All DBs
Position
Unknown
AA seq
388 aa
AA seq
DB search
MFCNISGEVPREPVISKTSGHVFERRLIEKSLEASKGVCPVTGNELSVSDLLPVEANLAV
RPRPLTATSLPGMLAMFQNEWDDVMLETHVIKQQLHATRKELSHALYQHDAACRVIARLV
NERDEAQRLVAELQRSLAGKLTSEGISSNTPNISKDGLGPEVITHLTDFWKKTSRSRKKR
PVSRQLSPAETIIGWSKKTSMELFNSNSGATDVAICQLSGAIVCAGGKSGVAWLAAASAP
AATSKGCVADTCSIIPGSASSPGTVFATSGGDKITLWKANEKDLSTVASVRVPGAASVAA
HPTGSYAAIISSNASWGLVAFGTEMSTLRELSLVMPDDPSEAPSAPLKFHPDGLILATPT
TSSQGHVVRIWDVKEQKSVHAFEGHSAP
NT seq
1164 nt
NT seq
+upstream
nt +downstream
nt
atgttttgcaatataagcggtgaagtgccgcgagagcccgtgatttcgaagacctcgggg
cacgtttttgaaagacgattaatcgagaagtccttggaggcgtcgaaaggtgtctgccct
gtcacgggcaacgaactgagtgtgtcagacttgcttccggttgaggcgaatcttgcggta
cgcccgcggccgttgacagcaacgtcgctcccggggatgctagcgatgtttcaaaatgaa
tgggatgatgtgatgctggaaacccacgttatcaaacaacagcttcacgcaacccgcaaa
gaactctcgcatgcactttaccaacacgatgcagcgtgtcgtgtgattgcgcgtcttgtg
aatgagcgggacgaggcgcagaggctcgtggccgaactgcaacgcagtctcgcaggcaag
ctaacgtcggaaggaatctcaagcaacacaccgaatattagcaaggatgggctaggccct
gaagtcatcacgcacttgacagatttctggaagaaaacatccaggtcacgcaagaaacga
ccggtgtcaaggcaactgagccctgctgaaacaataattggctggtcgaagaagacgtcc
atggaattgtttaattcaaattcgggtgcaacagatgtcgctatttgccagctttcaggt
gcaatcgtctgtgctggcggaaaatctggtgttgcttggctcgccgcggccagtgcccct
gccgccacaagtaaaggttgtgttgcggatacatgttccatcattccgggtagtgcatcc
tcaccgggcacggtatttgcaacctcaggcggcgacaaaataactctctggaaagccaac
gagaaggacctctcgaccgttgcgtctgtcagagtccctggcgctgcatctgtggcagct
cacccaacaggaagctacgccgcaattattagcagcaatgcaagctggggtctcgtggcg
tttggcactgagatgagtacgctacgcgagctaagtctggtgatgcctgatgatcctagc
gaagctccgtctgcaccacttaagttccacccagacggcctcattcttgcaacgccgaca
acttcatcgcaggggcatgttgtccgtatttgggatgtcaaagagcagaagagtgttcac
gctttcgaaggtcattcggcacct
DBGET
integrated database retrieval system
