Aureococcus anophagefferens: AURANDRAFT_55633
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Entry
AURANDRAFT_55633 CDS
T04134
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
aaf
Aureococcus anophagefferens
Pathway
aaf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aaf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AURANDRAFT_55633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aaf03041
]
AURANDRAFT_55633
Enzymes [BR:
aaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AURANDRAFT_55633
Spliceosome [BR:
aaf03041
]
Complex C
Other components
Step II factors
AURANDRAFT_55633
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_30
T2SSE
AAA_16
AAA_19
Flavi_DEAD
AAA_24
ABC_tran
AAA_7
AAA_23
cobW
Motif
Other DBs
NCBI-GeneID:
20222557
NCBI-ProteinID:
XP_009042122
JGI:
Auran1_55633
UniProt:
F0YNY1
LinkDB
All DBs
Position
Unknown
AA seq
922 aa
AA seq
DB search
MARQRAKGERHAGSAPAAAAGGAATPAGQGKVAGLSARRSQLHADQAAWEENRLLTSGVA
SEREVELDFDDEAEARCTLLVHQLRPPFLDGRVAFTTQQDMVPTVRDATSDMATNARNGS
ARPAALLRSMRQTRERSKMRHRFWELGGSRMGDALKGGDQGRGVSMAAAPGELSRDARER
RAARADAEYDHRAYGSFRGARAGGAEPGQRPGASEFTSSRSILEQRRSLPVRGVRDALLT
VVRDNQVVIIVGETGSGKTTQLTQYLREDGLGAGGRIGCTQPRRVAAMSVAARVAAEVGC
DVGEEVGYAIRFEDVTSERTVIKYMTDGVLLRESLREPDLDGYAVVVMDEAHERSLHTDV
LFGILRDVLRRRRDLKLVVTSATLDADAFAAFFGGAAPVFAIPGRTFPVEKYFAKSPCED
YVDGAVKQALAIHLSYPPGDILVFMTGQEDVESTCGALAERCAALGDGVPPLLLLPMYSQ
LPADLQARIFDAAAGGVRKCVVSTNVAETSLTVDGVKYVVDAGYCKLKVYNPRVGMDALQ
VAPVSRANAAQRAGRAGRTGPGFCYRLYTERQFRDELLATQVPEIQRTNLGNVVLLLKSL
GVDDLLDFAFMDPPPQENILNSMYQLWVLGALDNGGGLSDLGARMVEFPLDPPLAKMLLF
AAGLACGAEVLAIVACLSVPNVFFRPKDREEESDAAREKFFVPESDHLTLLNVYAAWRAA
GYDARWCDRHFVVHKALAKAREVAAQLLDLMEAQRVPHESCGPDSWDVVRKAICSAYFFN
AARLKGVGEYVNMLSAIPCNLHPSSSLFGLGYTPDHVIYHELVMTSREYMKCTTAVDGEW
LAELGPMFFSIKQSYKDRVAKRKRERTETDLMDAEFKDRQRLAALEDKVAQRGRALRART
PLPGTRICGFPGGGGLAESRPS
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggcgcggcagagggccaagggcgaacgccacgcgggcagcgcgcccgcggcggcagcc
ggtggcgcggccacgcccgctgggcaaggcaaggtcgcgggcctatcagcgcggcggtcg
cagctccacgcggatcaggccgcgtgggaagagaatcggctgctcacgtcgggcgtcgcg
agcgagcgcgaggtcgagctcgacttcgacgacgaggccgaggcgcgctgcacgctcctc
gtgcaccagctgcgcccgccattcctcgacggtcgcgtcgcctttacgacgcagcaagac
atggtgccgacggtccgagacgcgacgtcggatatggccacgaacgcgaggaacggctca
gcgcgccccgccgcgctcctccggtccatgcgacagacgcgcgagcggagcaagatgcga
caccgcttctgggagctcggcgggagccgcatgggcgatgcgctcaagggcggcgatcag
ggacgcggcgtcagcatggcggcggcccccggggagctttcacgcgatgcgcgcgagcgc
cgcgcggcgcgcgccgacgcggagtacgaccaccgtgcgtacggctcgttccggggtgcc
cgagcgggaggggcggagcctgggcagcggcctggcgcatctgagttcacgtcctcgagg
tcgatcttggagcagcggcggagccttcccgtacgcggcgtccgggatgcgctgctcacg
gtcgtccgtgacaaccaggtcgtgatcatcgtcggcgagacggggtctgggaagacgacg
cagctgacgcagtaccttcgcgaggacgggcttggcgcaggcgggcgcattggctgcacg
cagccgcggcgcgtcgcggcaatgagcgtcgcggcacgcgtagcggcggaggttggctgc
gacgtcggcgaggaggtcggctacgcaattcgtttcgaggacgtgacgagcgagcggacg
gtgatcaaatacatgacggacggcgtcctcctccgcgagtcgctccgcgagcccgacctc
gacggctacgctgtcgtcgtcatggacgaggcacacgagcgtagcctccacacggacgtt
ctcttcggtatcctgcgcgacgtgctccggcggcgccgggacctgaagctcgttgtcacg
tccgcgacgctcgacgcggacgcgttcgcggcgttcttcggtggcgccgctcctgtcttc
gccatcccaggccgaaccttccccgtggagaagtacttcgccaagtccccctgcgaggac
tacgtcgatggcgccgtcaagcaggccctcgccatccacctaagctacccgccgggcgac
attctcgtcttcatgacgggccaggaggacgtcgagtcgacgtgcggcgcgctcgcggag
cgctgcgcggcgctcggcgacggtgtgccgccccttctcctcctccctatgtacagccag
ctccccgcagacctccaggcccgcattttcgacgcggccgccgggggcgtccgcaagtgt
gtcgtgtcgacaaatgtcgccgagacgtcgctaaccgtcgacggtgtcaagtacgtcgtc
gacgcgggttactgcaaactcaaggtctacaacccccgcgtcggtatggacgccctccag
gtcgcgcccgtgagccgcgcgaacgcagcgcagcgcgccggccgcgcaggccgcacgggc
cccggcttctgctaccgcctctacaccgagcgccaattccgtgacgaactcctcgcgacc
caggtcccagagatccagcgcacgaacctcggcaatgtcgtcctcctcctcaagtcgctc
ggcgtcgacgacctcctcgacttcgcgttcatggacccaccaccgcaggagaacatctta
aactccatgtaccagctctgggtccttggcgccctcgacaatggtggcgggctcagcgac
ctcggcgcacgtatggtcgagtttcccctcgacccgccccttgccaagatgcttctcttc
gcagccgggctcgcgtgtggcgccgaggtcctcgcgattgtcgcatgcctcagcgtccca
aatgtcttcttccggcccaaggaccgcgaggaggagagcgatgccgcacgtgagaagttc
ttcgtccccgagagcgaccatctcacgctcctcaacgtctacgctgcgtggcgcgccgcc
ggctacgacgcgcgctggtgcgaccggcacttcgtcgtgcacaaggcccttgccaaggcg
cgcgaggtcgccgcccagctcctcgacctcatggaggcccagcgcgtgccccacgagtcc
tgcggccccgacagctgggacgtcgtccgcaaggccatctgctccgcgtatttcttcaat
gctgcgcgcctcaagggtgtcggggagtacgttaacatgctgtccgccattccttgcaac
ctgcacccctcctcgtcgctcttcggcctcggctacacgcccgatcatgtcatctaccac
gagctcgtcatgacctcgagggagtacatgaaatgcacaacggctgtcgacggtgagtgg
ctcgccgagctcgggcccatgtttttctccatcaagcaatcatataaggaccgcgtcgcc
aagcgaaagagggagaggactgagaccgacctcatggacgccgagttcaaggaccggcaa
agactcgcggcgctggaagacaaagtcgcacagcggggcagagccctgcgggctcgaacc
ccactgccaggtacgcgtatctgcggctttccaggcgggggggggctagccgagtctcgg
ccttcctaa
DBGET
integrated database retrieval system
