Aedes aegypti (yellow fever mosquito): 5575411
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Entry
5575411 CDS
T01053
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aag
Aedes aegypti (yellow fever mosquito)
Pathway
aag03013
Nucleocytoplasmic transport
aag03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aag00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
5575411
03015 mRNA surveillance pathway
5575411
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aag03019
]
5575411
Enzymes [BR:
aag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
5575411
5.6.2.5 RNA 5'-3' helicase
5575411
Messenger RNA biogenesis [BR:
aag03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
5575411
mRNA cycle factors
Common to processing body (P body) and stress granule
5575411
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NAT10_TcmA_helicase
ATPase
NPHP3_N
nSTAND3
AAA_22
AAA_32
SRP54
AAA_10
TetR_C_28
AAA_16
AAA_5
AAA
Motif
Other DBs
NCBI-GeneID:
5575411
NCBI-ProteinID:
XP_001661931
LinkDB
All DBs
Position
3
Genome browser
AA seq
1121 aa
AA seq
DB search
MSVDTYDGVVNSQTLTFLDTEENDLIGADTQGTDYDFRDFTIPSQSQTLASQFDHLGAGA
GSQLNGFGRRLGGSDKVKVAGITSAIGELQFEEDEDDPVAQSQELPPHACRYCGIHEPST
VVMCNICKKWFCNGRGSTSGSHIVNHLVRAKHREVTLHGDGPLGETVLECYSCGVRNVFV
LGFIPAKADSVVVLLCRQPCAAQNSIKDMNWDQEQWKPLIADRCFLFWLVKVPTEQEQLR
ARQVSAAQINKLEELWKENVDATFQDLEKPGIDKEPAQVLFRYVDGYQYQNIFGPLVKLE
ADYDKRLKESQTQENIEIRWDTGLNRKTIAYFTLAKNDGDMKLMHGDELRLRYTGELHKP
WSCVGHVIKVPDNYGEDVGLELKHNHQAPIECTSNFAVDFIWKGTSFDRMQMALRKFAVD
DNSVSNYIYSRLLGHGRADGSDDVTFRINNLPKHFSAPNLPDLNRSQVYAVKHALQRPLS
LIQGPPGTGKTVTSATIVYQLVRLNGGPVLVCAPSNTAVDQLTEKIHRTSLKVVRVCAKS
REAIESPVSFLALHNQIRNMEQNSDLKKLQQLKDETGELSSSDEKRYRSLKKQAERELLE
AADVICCTCVGAGDPRLQRIKFSSILIDESMQSTEPECMVPVVLGAKQLILVGDHCQLGP
VVMCKKAAKAGLSQSLFERLVVLGIRPFRLEVQYRMHPELSQFPSNFFYEGSLQNGVCAE
ERKLKVDFPWPSPDTPMFFLVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLKAGVKPDQ
IGIITPYEGQRAYLVQYMQYQGSLHSKLYQEIEIASVDAFQGREKDIIIMSCVRSNEHQG
IGFLNDPRRLNVALTRAKYGIIIVGNPKVLSKQQLWNHLLNFYKDKKVLVEGSLNNLKES
MIQFTKPKKIVNTLNPGSHFMNNTMYDAKDTGYFERGHCSAFSGSSFGNPGPIGSMMNGP
RNQPLDMFSRTHDPISYISPDRVQAAMNNMPIPVGMFMNMPNVQPRYFQQQQAVQAAKQA
RRIKPGVIGSKPKPRPIGPPSSQINTSGAIGTGSLTQGMSQNMSQPGFSLSQQPDFSQDY
MAEYQSQVDGLLSQDSNFGPSQSAVERLAFDLPPNQFSQPY
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggacacgtacgatggggtggtcaattcccaaacgctgacgttcctggacacc
gaggaaaacgacctgatcggagcggacacccaggggacggattatgactttcgcgatttc
accattccatcgcagagccaaacgttggcctcgcagttcgaccatttgggtgccggagca
ggaagccagcttaacgggtttggccgtcgtctaggcggttcggataaggtgaaggtcgcc
ggaataacatcggctatcggtgagctgcagttcgaggaggacgaagatgacccggtggcc
caaagtcaagagttgccaccgcatgcttgtcgctactgcggtattcacgagccgagcacg
gtcgtcatgtgcaacatctgcaagaagtggttctgcaatggacgtggcagcacctcggga
tcgcatatcgtgaaccacctggtgagggctaagcatcgtgaagtgacgctgcatggcgat
ggtccgcttggagaaacggtgctcgagtgttactcctgcggcgttaggaatgtgtttgtg
ctgggattcattccggccaaggcggattcggttgtagtgctgctgtgcagacaaccctgt
gctgctcaaaattccatcaaagatatgaactgggatcaggagcaatggaagcccttgatt
gccgatcgatgcttcctgttttggttggtgaaggttcctaccgagcaggagcaactgcgt
gctaggcaggtgtcggctgcccagattaacaaactggaagaactgtggaaggagaatgta
gatgcgacattccaagatttggaaaagccgggaatcgacaaggaaccggctcaggttctg
ttccgctacgttgacgggtaccaatatcagaacatttttggaccgttggtgaagctggaa
gcggactatgacaagcggttgaaggaaagccaaacgcaggaaaacatcgagattcgttgg
gatacgggattgaaccggaagacgattgcttacttcacacttgctaaaaatgatggcgat
atgaagctgatgcatggagatgagttgcgtttgagatacaccggagagttacataagccg
tggagttgcgttggacacgtcatcaaggtgccggacaattatggtgaagatgttggattg
gaactgaagcataaccaccaggctccgatcgagtgtacatcaaactttgcagtggatttc
atttggaagggtacatcatttgaccgaatgcaaatggcattgcgcaaattcgccgttgac
gataacagtgtttcgaactacatctattcgagactgcttggccatggtagagcagatgga
tcggatgacgttacgtttcggatcaataatcttccgaagcatttcagcgctccgaattta
ccggatttgaatcgctcgcaagtgtacgcagtaaaacatgctcttcaacgtcccctaagc
ttaattcaaggacctcccggtactggaaagacggtcacttcagcgaccatcgtgtatcaa
ttggttcgcttgaatggtggtcctgttttggtgtgcgctccaagtaacactgccgtggat
caattgacggagaagatccatcgcacaagcttgaaagtcgtccgagtttgtgccaagtcc
cgtgaagctattgaatcgcctgttagtttcctggcactgcataaccagattcgtaatatg
gaacagaacagtgatttgaagaagctgcaacaactaaaggatgagacaggtgaattgagt
tcgtctgatgagaaacgctatcgttcattgaagaagcaagctgagcgcgaacttctcgag
gccgcagacgttatctgttgtacctgtgttggagctggcgatcctcgtttgcagcgtatc
aagttcagttccattctcattgatgaatcgatgcagtctactgaacctgaatgcatggtc
ccggtcgttcttggcgccaagcagttgattttggtcggagatcactgtcagcttggccct
gttgtaatgtgcaagaaggcggccaaggctggattatcgcagagtttgtttgaacggttg
gtcgtactgggaattcgtccattccgtttggaagtacaataccgtatgcatccggagttg
tcacagttcccttccaactttttctacgaaggaagtttgcagaatggagtttgtgccgag
gaacgtaagctgaaggtagatttcccatggccctcaccggacacgccgatgtttttcctg
gtaacacaagggcaagaagaaatcgcaggttcaggaacatcttacctgaatcgtacagaa
gcatcgaacgtagaaaaaataacgactcgctttttgaaggctggagtgaaaccagatcag
atcggtatcataacaccgtacgagggccagcgagcctacttagtacagtacatgcagtat
caaggatcgctgcattctaagctgtatcaggagattgaaattgctagcgttgacgcgttt
caaggccgagaaaaggacatcatcattatgtcatgcgttcgttccaatgaacatcaagga
ataggtttcttgaacgatccaagacgtctcaatgtagctttgactcgtgccaagtatgga
ataatcattgtcggcaatccgaaggttctatcgaagcagcaattatggaaccatttacta
aatttctataaagacaaaaaagtgttggtcgaaggatccttgaataatcttaaggaatcg
atgatccagtttacgaaaccgaaaaagattgtcaatactttgaatcccggatcgcatttt
atgaacaacaccatgtacgacgccaaggatactggctactttgaacgaggtcattgttca
gcattttccggtagttcctttggtaatccaggtccaattggtagcatgatgaatggaccc
agaaatcaacctctagacatgttttcaagaactcatgatcccatcagttacatctcaccg
gatcgtgtccaagcggccatgaacaatatgccgatacctgttggaatgttcatgaacatg
ccaaatgttcaaccacgctatttccagcagcagcaagcagttcaggctgccaaacaagct
cgtcgtattaaaccgggtgtcatcggaagcaaacctaaaccacgcccaattggaccaccg
tccagtcagattaacacttctggagcaattggcactggttcgctaactcaaggcatgtcc
caaaatatgtcgcagcctggatttagtctctcgcaacaaccggacttttcgcaggattac
atggccgaatatcagtcccaagtcgatggacttttgtcgcaagactccaactttggacct
agccaatctgctgtggagcgtttggcatttgacctgccgccaaatcagttttcgcagccg
tattga
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