Aricia agestis (brown argus): 121731673
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Entry
121731673 CDS
T09904
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
aage
Aricia agestis (brown argus)
Brite
KEGG Orthology (KO) [BR:
aage00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
aage03016
]
121731673
Enzymes [BR:
aage01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
121731673
Transfer RNA biogenesis [BR:
aage03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
121731673
Prokaryotic type
tRNA splicing ligases
121731673
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF6471
ScdA_N
Motif
Other DBs
NCBI-GeneID:
121731673
NCBI-ProteinID:
XP_041977171
LinkDB
All DBs
Position
11:complement(8884481..8886975)
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKINPHCWKIKKGFQPNMNVEGVFYVNNTLEKLMLDELKNSCRPGMA
GGFLPGVKQIANVAALPGIVGRSIGLPDIHSGYGFAIGNMAAFDMSDNKSIVSPGGVGFD
INCGVRLLRTNLYEKDIQPVKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KFAAGKMGLEKVGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIDVNDRQLACARIN
SVEGQDYLKAMAAAANFAWVNRSSMTFLTRQAFAKQFKMAPDDLDMHVIYDVSHNIAKIE
EHVVDGKAKTLLVHRKGSTRAFPPHHPMIPVDYQLTGQPVLIGGSMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNIDYKEVLNKLENMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHAAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgttaggcaatacaacgaagagttaaaatacttagaaaagattaatcctcattgt
tggaaaatcaagaaaggtttccaaccaaacatgaacgtagaaggcgtattttatgtgaat
aacactttagaaaagctaatgcttgacgagttgaaaaactcctgtcgtccaggcatggca
gggggttttcttcctggagtgaagcaaatagccaatgttgcggcattacctggaatcgtc
ggtcggtccatcggtctccctgatatacattcgggatatggatttgctataggtaatatg
gcagcatttgatatgtctgataacaaatctattgtttcgcctggaggggtgggttttgat
attaattgtggtgtcagattgttgaggacaaacttatatgaaaaagatattcaaccagtg
aaggaacaattagctcaaagtttatttgatcatattcctgtcggagtaggctccaagggc
ataataccaatgaatgctcgcgatttggaggaagctttggaaatgggcatggactggtcc
ctgcgtgaaggttatgtttgggccgaggacaaagagcattgtgaagaatatggacgcatg
ttgaatgcagatccttctaaagttagtttaagagctaagaagagaggtctcccacagctg
gggacactaggggcaggcaaccactatgctgagatacaagttgtagatgagatctatgac
aaattcgcagcagggaaaatgggcctggaaaaggtaggccaagtgtgtgtaatgatacac
tctggtagcagaggatttggacaccaggttgccaccgatgctctggtgcaaatggagaaa
gctatgaagagggatcaaattgatgtcaacgatagacagctagcgtgtgccagaatcaat
tcagttgaaggtcaagactacttgaaggcaatggctgctgcggccaattttgcttgggtg
aatcggagttcaatgaccttccttactagacaagcttttgccaagcaattcaaaatggcc
cctgacgatttggacatgcatgtcatttatgatgtgtcacataatattgccaagatagaa
gagcatgttgtagatgggaaagcaaaaacattactagtccacaggaagggttcaacgagg
gccttcccacctcaccaccctatgataccagtagattaccagctcactggacaacctgtg
ctcattggtggttcaatgggaacctgcagctatgtactaaccggtactcaccagggcatg
accgaaacttttggatctacttgccatggggctggacgcgcactttctcgcgcgaaatca
aggcgtaatattgattacaaagaagtgctgaataagcttgaaaacatgggaatttccata
agagtcgcatcacctaagttggttatggaagaggcacctgaatcttacaaaaacgtaaca
gatgttgttaatacttgtcatgcggcaggtataagtaaaaagactgtaaaattacgaccc
atagccgtaatcaaaggttaa
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