Anatilimnocola aggregata: ETAA8_05490
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Entry
ETAA8_05490 CDS
T07027
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aagg
Anatilimnocola aggregata
Pathway
aagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAA8_05490 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aagg03019
]
ETAA8_05490 (rne)
03009 Ribosome biogenesis [BR:
aagg03009
]
ETAA8_05490 (rne)
Enzymes [BR:
aagg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ETAA8_05490 (rne)
Messenger RNA biogenesis [BR:
aagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ETAA8_05490 (rne)
Ribosome biogenesis [BR:
aagg03009
]
Prokaryotic type
rRNA processing factors
ETAA8_05490 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QDU25481
UniProt:
A0A517Y5F7
LinkDB
All DBs
Position
complement(704403..706052)
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AA seq
549 aa
AA seq
DB search
MKSEMLVNVSQPEECRIAIIEDGLLEELYIERASADNYVGNIYRGRIVNLEPSIQAAFVD
FGVGRNGFLHISDVESQYFRQGGFDPAEAMMGGRNADIDTGEDDNGDSDEEGGEEGDRPP
QRQQRQRRPPRGGRPRIKPPIQEIFRRGDEVLVQVIKEGIGTKGPTLSTYISIPGRYLVL
MPALGRVGVSRKIEDDQLRRTLRDTLLELNPPKGLGFIVRTAGQDRAKKELSRDMAYLLR
LWKVIVRRLRKTTGPGVIYEESDMIIRTIRDIFTAEIDAIYIDQADAYERAKEFLQLVMP
RHVNRLHHYDGREPLFHKYKLDQEIAGIHKRKVPLRGGGSIVIDQTEALVAIDVNSGNFR
TGDDAETSAFKLNISAAKEIARQLRLRDLGGVVVNDFIDMRREKHRRGVERALRDAMRRD
RARTKILRTSPFGLIEMTRQRIRPSLKTAVYSDCPCCTGRGVVKTAESMAIEVVRLLMLA
SQQPKIARATVKVSEPVGAYLNNKKRREITRLEDDCNMSVQILSSATVFPEHLEIDLRDV
EGREIVLPV
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcgaaatgttggtgaatgtctcgcagcccgaggagtgccgaattgccatcatt
gaggatggcctgctggaagagctgtacatcgagcgcgcgagtgcggacaattacgtcggc
aatatctatcgtgggcggatcgtaaacctggagccaagcattcaggctgcgttcgtcgac
ttcggcgtcggccgcaacggctttctgcacatcagcgatgtcgagtcgcaatacttccgc
caaggtggtttcgacccggccgaagcgatgatgggcggccgcaatgctgatatcgatacc
ggtgaagacgacaacggcgacagcgacgaagagggtggcgaagaaggtgaccgtccgccg
caacgccaacagcgccagcggcgtccgccccgtggtggccgcccacgcatcaagccgccg
attcaagagatttttcgccgtggcgacgaagtgctggtgcaagtcattaaagaagggatt
gggaccaagggtccaaccctgtcgacctacatcagcattcccggccgctacttggtgttg
atgcccgcgctcggccgcgttggtgtctcgcgcaagatcgaagacgatcaactgcgccgc
accctgcgagacacgctgctggaacttaatccgccgaaggggctgggcttcatcgtgcgg
actgctggtcaggatcgggcgaagaaggaactttcgcgcgacatggcctatctgctgcga
ctgtggaaggtgatcgttcgccgcttgcgaaagaccactggaccaggcgtgatttacgaa
gaaagcgacatgatcatccggaccattcgcgacatcttcaccgccgagatcgatgccatc
tacatcgaccaggccgatgcctatgaacgggccaaagaattcttgcagctggtgatgccg
cggcacgtgaaccggttgcatcattacgacggccgcgagccactgttccacaaatacaag
ttggatcaggaaatcgctggtattcacaagcgcaaggtgccgctccgcgggggtggttcg
attgtcatcgatcaaaccgaagcgctcgtcgccatcgacgtgaatagcggtaacttccgc
accggcgacgatgccgaaacgagtgccttcaagctgaacatctcggcggcgaaggaaatt
gcccgccaattgcggctgcgcgatctgggcggtgtcgtagtgaacgacttcatcgacatg
cgtcgtgagaagcatcgccgcggtgtcgaacgggccctgcgcgacgcgatgcgccgcgac
cgcgcccgcaccaagattctgcgaacgagtcccttcggtttgatcgaaatgactcgccag
cggattcgccccagcttgaagacggctgtttatagcgactgcccctgctgcacgggccgt
ggtgtggtgaagactgccgaaagcatggcgattgaagtcgttcgcctgctgatgctcgcc
agccaacagccgaagattgcccgggctacggtcaaggtttcggagcccgttggcgcttac
ttgaacaacaagaagcgacgcgagatcacccggctggaagatgactgcaacatgagcgtg
cagattctcagctcggcgacggtgttccccgaacacctggaaatcgatcttcgcgatgtc
gaaggtcgcgagattgtgctgccggtgtag
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