Anatilimnocola aggregata: ETAA8_32670
Help
Entry
ETAA8_32670 CDS
T07027
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aagg
Anatilimnocola aggregata
Pathway
aagg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aagg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ETAA8_32670 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aagg03400
]
ETAA8_32670 (mfd)
Enzymes [BR:
aagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ETAA8_32670 (mfd)
DNA repair and recombination proteins [BR:
aagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ETAA8_32670 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QDU28167
UniProt:
A0A517YD59
LinkDB
All DBs
Position
complement(4120762..4124010)
Genome browser
AA seq
1082 aa
AA seq
DB search
MTATLPATETAAESLRLLPDSLMRYEGFAAATAALATGQPATFDGVWGSSCALLAAALAR
AGQRPVLIVTAHEREADDLVADLPLFGTMQAVSFPAWTTLPEDRGIRDETYGKRIRLLKQ
LALGSPAGSAPVVVGSIAALMQPVPSAEQLRKATRTIRRGERLNIDALLRWFVESGFHAT
SAVELPGEFSHRGGILDIFAPDWLEPVRLELFDDEIESLRSFDVSTQRSLEILDQIEVTV
LPKTEPPSAHLADYLPANAWAMLIEPQQLADEGKNILQRTDKPAEFHSVTAVLASCSRLG
VATAAHLSGGTYGAHCHLPIESVERFSGELQRVRDELDHVAVDHSVYLIVATDAETERLR
ELLRETKLMATGRLHFVIGSLREGFRLPRDQMLIITGGELFHRGELRRIPRRHLGKAIDS
FLDLRDGDLVVHLAHGIGRYRGLKQISKNGQAEEHLELEFDGGTRIYVPAIKIDLVQKYV
GGTKTRPTLAKIGGKTWIKQKEAAESAVRDLAVEMLEVQAMRSSRPGIAFTVDSDWQREF
DSSFPYSETVDQLSAIRAIKSDMTKPRPMDRLLCGDVGFGKTEVAMRAAFKAVDNGYQVA
VLVPTTILCEQHYNSFCERMAEFPFDIGKLSRFSTPQQTRETVAGIKSGRVDIVIGTHRI
ASQDIEFHNLGLVVIDEEQRFGVDVKERLKLLRATVDVLTLSATPIPRTLHMSLVGVRDI
SNLESPPEDRVAVETRVTRWDNDLIRHAINRELGREGQIYFVHNRVNDIEQVAKRINQLV
PEARIRIGHAQMADDELEQVMIDFVAHKFDILVATTIVESGLDIPNANTIFIDEADRYGL
ADLHQLRGRVGRYKHRAYCYLLTDPNRHITPNASRRLRAIEEFSEMGAGFAISMRDLEIR
GAGNLLGTQQSGHIATVGYELYCQLLENAVRALQNSTPRLKLEVDINLPGEALLPDNYVP
DLRLKIDLYRRLTRINAFQELDDIRAELIDRFGPIPRQVERLLALVELKMDATLWFISAI
FREDKFVVFHYRDRSRLDQLARQNPGKLRIVDDKSAYLPLPANVTEPDQIFSWVKSVLRP
IK
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgacggcaacattgcccgccacagagacagctgccgagagccttcggctgctgcccgat
tcgctgatgcgttatgaaggcttcgccgcggcgaccgcagcgttggcaaccggccaaccc
gcgacgttcgacggagtctggggctcaagctgcgcgctgctggcggccgcactcgccaga
gcagggcaacgtcccgtgctcattgtcactgcacatgagcgtgaagcggacgatctcgtg
gccgatttgccgctcttcggcacgatgcaggcagtcagctttcccgcgtggactacgctg
cccgaagaccgcggcattcgcgacgaaacctacggcaagcggattcgcctcctaaaacaa
ctggctcttggttcgcccgccggctctgcaccggttgtggtcggcagtattgccgccctg
atgcagcccgtgcccagtgccgagcaattgcgtaaggcgacgcggacgatccgccgcggc
gaacgactgaatatcgatgcactgctgcgctggttcgtcgaaagtggctttcacgcgacg
agcgcggtcgaactgcccggcgaattttcccatcgcggcggcattctcgatatcttcgcg
cccgattggctggagcctgtgcggctggagttgttcgacgacgaaattgagtcgctccgt
tcgttcgatgtctccacccagcgcagcttggaaatcctcgaccagatcgaagtcacggta
ttgcccaagacagagcccccaagcgcgcatctggcggactatttgcccgcgaatgcctgg
gcgatgctgattgagccgcagcaattggccgacgaaggtaaaaacatcctgcagcgaacc
gacaagcccgctgaatttcattcggtgacggcagtcctggccagttgcagtcggctgggt
gtcgccaccgcggcccatctgtcgggcggcacttatggtgcccactgccatctgcccatt
gagtcagtcgaacgcttcagcggcgaactgcaacgcgtgcgcgatgaacttgaccatgtg
gccgtcgatcacagcgtctatttgattgtcgccaccgatgccgagaccgaacggctgcgc
gaacttctgcgcgaaacgaaactgatggcgacgggccggctgcattttgtgatcggcagt
ttgcgcgaaggatttcggctgccgcgcgaccagatgctgattattaccggcggcgaattg
tttcatcgcggcgaactgcggcgcattccgcggcgacatctcggcaaggcgatcgacagt
tttctcgatttgcgcgatggtgatctggtcgttcacctggcgcacggcatcggtcgctat
cgcgggctgaagcagatcagcaagaacggacaggccgaagaacacctggagttggagttc
gatggtggcacgcggatctacgttccggcgatcaaaatcgatttggtgcaaaagtatgtt
ggcggaacgaagacccgcccgacgctagccaaaatcggtggcaaaacttggatcaaacag
aaggaagccgcggagagtgccgttcgcgacctggctgtcgaaatgctcgaagtgcaggcc
atgcgcagcagccgcccgggcattgcgttcaccgtcgatagcgactggcagcgcgagttt
gattcgtccttcccgtacagcgaaaccgtcgatcagctttcagccattcgcgcgatcaag
tccgatatgacgaagccgcggccgatggatcggctgttgtgcggcgacgtcggctttggc
aagaccgaagtcgcgatgcgggcagcattcaaagcagtcgacaacggctatcaggtcgcc
gttctcgtgccaacgacaatcctgtgcgagcagcactacaacagtttttgcgagcggatg
gccgagtttcccttcgatatcggcaagctcagccgctttagcacaccgcagcaaactcgc
gagacggtggcgggaatcaagtcgggcagagtcgatatcgtcattggcacccatcgcatt
gcctcccaagatatcgagttccataacctgggactggtcgtcatcgatgaagagcagcgg
ttcggcgtcgatgtgaaagagcggctgaagttgctgcgcgcgacggtggacgtgctgact
ctctcggcgacgccgattccgcgaacgctgcacatgtcgctggtcggcgtgcgtgacatt
tcaaatctcgaatcgccccccgaagatcgtgttgccgtcgaaacgcgcgttacccgttgg
gataacgatcttattcgccatgccatcaaccgcgagttggggcgcgaaggccagatttac
ttcgtgcataatcgcgtcaacgatatcgagcaggtcgccaagcggatcaatcaactggtt
cccgaggccaggattcggattggccacgcgcaaatggccgacgatgagctcgaacaagtg
atgatcgactttgtggcccacaagttcgacattctggtggcgaccaccattgtcgaaagt
ggactcgacatcccgaatgcgaacaccatcttcatcgacgaagcagaccgctacggtctc
gccgatctgcatcagttgcgtggtcgagtcggacggtacaaacatcgcgcgtactgctat
ttgctgaccgaccccaatcgtcacatcacgcccaatgcctcgcgccggctgcgcgccatc
gaagagttcagcgagatgggcgccggctttgccatttcgatgcgcgatctcgaaattcgc
ggtgctggcaacctgcttggcacccaacagagcgggcacattgccaccgttggctacgag
ctttattgccagctgctggagaatgcagttcgggccctgcagaactccacgccgcggctg
aagttggaagtggatatcaacctgcccggcgaagcgttactgccggacaattacgttccc
gatttgcggctgaaaatcgatctctatcgccgcctaacgcggatcaacgccttccaggaa
ctcgatgacattcgcgcggaattgattgaccgcttcggcccgattccgcggcaagtcgag
cgactgctggcactcgtcgaactgaaaatggatgccacgctctggttcatctcggcgatt
tttcgcgaggacaagttcgtcgtcttccactaccgcgaccggagccgcctcgatcagttg
gcacggcaaaaccccggcaaattgcgaattgtggacgacaaatcggcgtatctgcctttg
ccagcaaacgttactgaaccggaccagatattttcttgggtgaaatcggtgttgcgaccg
atcaagtga
DBGET
integrated database retrieval system
