Anatilimnocola aggregata: ETAA8_56500
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Entry
ETAA8_56500 CDS
T07027
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aagg
Anatilimnocola aggregata
Pathway
aagg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aagg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ETAA8_56500 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aagg03021
]
ETAA8_56500 (rpoC)
03400 DNA repair and recombination proteins [BR:
aagg03400
]
ETAA8_56500 (rpoC)
Enzymes [BR:
aagg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ETAA8_56500 (rpoC)
Transcription machinery [BR:
aagg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ETAA8_56500 (rpoC)
DNA repair and recombination proteins [BR:
aagg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ETAA8_56500 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Peptidase_M23
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QDU30505
UniProt:
A0A517YJV5
LinkDB
All DBs
Position
7159087..7163430
Genome browser
AA seq
1447 aa
AA seq
DB search
MSSSSIGDTNYDRINDYASVKISLARPHDIRSWSFGEVKKPETINYRTYRPEKDGLFCER
IFGPEKDWECACGKYRGMKYKGMICDRCGVKVTHSRVRRKRMGHIELAAPVVHIWFFKAM
PSRLGNLLDMKTSSLEKVIYFQDYVVVNPGTTDLEREQLLTEEEYRDARAQYGEGSFEAD
MGAEAVRKLLGGLDLVKLSEELRKNLFETNSKQKKKDLINRLKIVESIRDSDNRPEWMVL
DVVPVIPPDLRPLVLLDSGNFATSDLNDLYRRIINRNNRLRKLVDLNAPEVIIRNEKRML
QQSVDALFDNNRCKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGP
RLRLHQCGLPKKIALELYQPFIIRKLKELGHADTIKSAKKMLERKDEEVWDILESAIQNH
PVMLNRAPTLHRMGIMAFEPVLVEGNAIHLHPLVCKGFNADFDGDQMAVHLPLSIEAQVE
AHTLLLSPHNIFAPSNGRPIMSPSQDMVMGCYYVTVELPGLLGEGMIFSSVAEAEMAFSM
GKIHLHARVKVRLPPWQKLKTEGEEKLKGGAIIQTTYGRMVFNNILPKGMDFYNKAMKGS
DLASCISDCYQALGRKPTIQLLDDMMQLGFREAMRSGLSFATDDLVTPDSKVTHISDAEK
KVMRFKKLYERGVITEKERYNQVLDTWTHAREAITSEMREAMRTDDRGGHGYVNPVYLMA
DSGARGGIEQIRQLAGMRGLMAKPTGEIIETPIKSNFREGLTVLEYFSSTHGARKGLADT
ALKTADSGYLTRKLADVAQNVVVTTFDCGTTQGITKGTIYRGEKVEVKLSAAIHGRVSRQ
SIVNPITDESIVKENELITPEIAKRIEDMGLEKIQVRSSMTCEAPLGVCRLCYGMDLATG
SMVEEGMAVGIIAAQSIGEPGTQLTMRTFHIGGTHTGQVEEHETKSKRDGIVKLTRIRSA
KNEDGQDVVLTRNGEITLLDAKGRELEKYDVPNGAILKIQENETVKAGQVLLEWDPHSIP
ILAEVAGKVRYEDVVEGETLRVEKDNSGNMRRMIMDHKGELHPQIVIEDSEGKPVEVYYL
PERAHIVVEEGKIVKAGSVLGKTPREATGIADITGGLPRVTEIFEARKPKDPAVMAEVDG
IVEILQEKRRGKRTIIVRSESGIEREHLVPHGKRFLVHAGDHVKAGQALVDGPLVPHDIL
RISGEEALQQYLLHEIQGVYRSQRVEINDKHIEIIVARMLRKVRIETSGDTNLLPGLVMD
RFDFRSVNTNLSKCLKISDKGDADFAEGAIVPKEAIEQTNSGIDALGGKTARGVKPKSAT
ASTQLLGITKAAVQSSSFISAASFQETTKVLTEAALAGKVDHLVGLKENVILGHLIPAGT
GFRAFQDSEVRYRPEALQAMSLEKDKTLESAFPLLQQGDTNGNAAATTAGSKSGSNALET
LLGGGKD
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcctcgtccattggcgataccaactacgaccgcattaatgactacgcttcggta
aagattagcctggctcggccgcacgatatccgcagctggtcctttggcgaagtaaagaag
cccgaaacgattaactaccgcacgtaccggccagaaaaagacggcctgttctgcgagcgc
atctttggccctgaaaaggactgggaatgcgcttgcggtaagtaccgcggcatgaagtac
aagggcatgatctgcgaccgctgcggtgtgaaagtcacccacagccgcgtccgccgtaag
cggatgggtcacatcgaactggccgcgccagtcgtgcacatctggttctttaaggcaatg
ccgagccggctgggcaacctgctggatatgaagaccagcagtctcgaaaaggtgatctac
ttccaagattacgtcgtggtgaatcccggtacgactgacctcgaacgggaacaactactg
acagaagaagaataccgcgacgcgcgcgctcaatatggcgaaggctcgttcgaagccgac
atgggtgccgaagccgtccgcaaactgctcggcggacttgatctggtaaagctatcagaa
gaacttcgtaagaatctgttcgagaccaactcgaagcagaagaagaaggatctgatcaac
cggctgaagatcgtcgaatcgattcgcgacagcgataaccgtcccgagtggatggttctc
gatgttgtcccggttattcctccggatctgcgcccgctggtgctcctcgatagcggcaac
tttgcgacgagcgatctcaacgatctctatcgccgcattatcaaccgcaataatcgtctg
cgcaagctggtcgacctgaacgcgccggaagtcatcattcgcaacgaaaagcggatgttg
caacaatcggtcgatgccctgttcgacaacaaccgctgcaagcgccccgtgctcggttcg
agcaatcgcccgctcaagtccctcacggacatgatcaagggtaagcagggtcgtttccgc
gaaaacctgcttggtaagcgcgtcgattactcggcccgttcggtgatcgtggtcggtcct
cgtttgcggctgcaccaatgtggtctgccgaagaagatcgcgctcgaactctaccagccg
ttcatcattcgcaagctcaaggaactcggtcacgccgataccatcaagagcgcgaagaag
atgctcgaacggaaggacgaagaagtttgggatatcctcgaatcggccattcagaatcac
cctgtgatgctgaatcgtgctccgacgttgcaccgtatgggtatcatggccttcgaacca
gtgctggtcgaagggaacgccatccacctgcatccgctggtgtgcaaaggcttcaatgcg
gacttcgacggcgatcaaatggccgttcacttgccgctgtcgatcgaagctcaggtcgag
gcgcatacgctgctcctttcgccgcataacatttttgctccttcgaacggccgcccgatc
atgagcccgtcgcaggacatggttatgggttgctactacgtcacggtagaactgccaggc
ttgctgggcgaaggaatgatcttttcttccgtcgccgaagccgaaatggccttctcgatg
ggcaagattcacttgcacgcccgcgtcaaagtccgcctgccaccatggcagaagctgaag
accgaaggcgaagagaagcttaagggtggcgcgattattcaaaccacctacggccgcatg
gtgtttaacaacatcctgccaaaggggatggacttttataacaaggccatgaagggtagc
gatctggccagctgcatcagcgactgctaccaggcgctcggccgcaaaccgacgattcag
ctgctcgacgacatgatgcaactcggcttccgcgaagcgatgcggagcggtctgtcgttc
gcgacggacgatctcgtgacgcccgactcgaaggtgacccacatctcggacgccgagaag
aaggtgatgcggttcaagaagctgtacgaacgtggcgtcatcaccgagaaagaacgatac
aaccaggtgctcgatacctggacgcacgcccgcgaagcgatcaccagtgaaatgcgtgaa
gcgatgcgtaccgacgaccgcggtggtcacggttacgtgaacccggtgtacttgatggcg
gactcgggtgcccgaggtggtatcgaacagattcgccagctcgctggtatgcgtggtctg
atggccaagccgaccggcgaaatcatcgaaacgccgatcaagtcgaacttccgcgaaggt
ttgacggtgctcgaatacttcagctcgacgcacggtgcccgtaagggtctggccgatacg
gctttgaagacggctgactcgggttacctcacccgtaagctggccgacgtagctcagaac
gtggttgtaacgaccttcgattgcggtacgacccaaggtatcaccaagggaacgatttat
cgcggtgaaaaggtggaagtcaagctgtccgcggccatccacggccgcgtcagccgccaa
agtatcgtgaatccgatcacggacgaaagtatcgtgaaggaaaacgagctgattactccc
gagattgccaaacgcatcgaagacatgggtctcgagaagatccaagtccgcagctcgatg
acctgcgaagcgccgctcggtgtgtgccgcctgtgctacggcatggatttggcaaccggt
tcgatggtcgaagaaggcatggccgtcggcatcatcgccgctcagagcatcggcgaaccc
ggtactcagctgaccatgcgtacgttccacatcggtggtacgcacaccggtcaggtcgaa
gagcacgaaaccaagtccaagcgcgacggtatcgtcaaactgacccgcattcgttcggcc
aagaacgaagatggccaggacgtggtgctgacgcgaaacggcgaaatcaccctgctcgat
gccaagggtcgcgaactcgaaaagtatgacgtgccgaacggtgccatcctcaagattcaa
gagaacgaaaccgtcaaggctggccaggtactgctcgaatgggatccgcacagcatcccg
attctcgccgaagttgcgggtaaggtccgctacgaagacgtggtcgaaggggaaactctc
cgcgtcgagaaggacaacagcggtaacatgcggcgcatgatcatggatcacaagggtgaa
ctacatcctcagatcgtgatcgaagactccgaagggaagccggtcgaagtttactacttg
ccggaacgagcccacattgtggtcgaagaaggcaagatcgtgaaagctggttcggtgctc
ggtaagacgccgcgtgaagcaaccggcattgcggacatcacgggtggtctgccgcgggtt
accgaaatcttcgaagctcgcaagccgaaggatccagctgtgatggctgaggtcgacggt
attgtcgaaattctgcaagagaagcggcgtggtaagcgaacgatcattgttcgcagcgaa
agcggcatcgaacgcgagcacctggtgccgcacggcaagcggttcctcgtgcacgctggc
gatcacgtcaaggctggccaggctctggtcgatggcccgctcgtgccgcacgacatcctg
cggatttcgggcgaagaagccctgcagcaatacctgctgcacgaaattcaaggtgtgtat
cgcagccaacgcgtggaaatcaacgataagcacatcgagatcatcgtcgctcgcatgctg
cggaaggtgcgcatcgaaacttcgggcgataccaacctgctgccgggtctggtgatggat
cgcttcgacttccgttcggtgaatacgaacctgtcgaagtgcttgaaaatctccgacaag
ggagatgccgatttcgccgaaggcgccatcgtgccgaaggaagcgatcgagcaaaccaac
agcggcattgatgccctgggcggaaagactgcccgcggcgtgaagcccaagtcggcgacg
gcgagcacgcagttgctcggcatcacgaaggcggccgtgcaaagcagcagctttatctcg
gcggccagcttccaagaaacgaccaaggttctcaccgaagcggctttggccggcaaggtc
gatcacctggttggtttgaaggaaaacgtgattctgggtcacttgatccccgccggtacc
ggcttccgtgcctttcaggattcggaagttcgctatcgccccgaagctttgcaggcgatg
tcgctggagaaggacaagaccttggagtctgctttcccgctactccagcaaggcgacacc
aacggcaatgcggctgccacaactgctggcagcaagagtggcagcaatgccctcgaaacc
ctgttgggtggcggcaaggattag
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integrated database retrieval system
