Anatilimnocola aggregata: ETAA8_56820
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Entry
ETAA8_56820 CDS
T07027
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aagg
Anatilimnocola aggregata
Pathway
aagg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aagg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ETAA8_56820 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aagg03019
]
ETAA8_56820 (cshA)
03009 Ribosome biogenesis [BR:
aagg03009
]
ETAA8_56820 (cshA)
Enzymes [BR:
aagg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ETAA8_56820 (cshA)
Messenger RNA biogenesis [BR:
aagg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ETAA8_56820 (cshA)
Ribosome biogenesis [BR:
aagg03009
]
Prokaryotic type
rRNA helicases
ETAA8_56820 (cshA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
QDU30537
UniProt:
A0A517YJZ4
LinkDB
All DBs
Position
complement(7199141..7200361)
Genome browser
AA seq
406 aa
AA seq
DB search
MLASLEEAGYQYPTQIQAGLIPLALEGVDVVGQARTGTGKTASFAIPILEQMYVGPDARH
PQALVLVPTRELAVQVRDEFAKLSFGRPITSVAVYGGKPIRSQIDKLKAGVHVVVGTPGR
VLDHLARGTIQMDELEIVVLDEADRMLDIGFRPDIEKILRRCPKDRQTLLLSATVPPPIA
KLAERYMVEPTTLNFSPKELAVETIEQFYYTVDPQRKFDLLQRLIEREKPRQAIVFCRTK
RGTEKIFQRLSKKLPGVGCMHGDMNQGGRDRVMRGFRDGTISYLIATDVVGRGIDVSAVS
HIINFDIPAFSDDYVHRVGRTGRMGREGVAYTFVAPDEGPELTRIEQRINIQLKRGEMEN
FEMVSAPMPLNRAIDSETGEAIDVPAPPPLPTNLMRRPPKRYRRGV
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcctcgctagaagaagctggttatcagtatccaacgcagattcaagccggcctg
attccgctcgcgctcgaaggggtcgatgtcgtaggtcaagctcgtactggcaccggcaaa
acggcttcgttcgcgattccgattctcgagcaaatgtatgtcggccccgatgcccgccat
ccgcaagcgcttgtgctcgtgccaactcgcgaacttgccgtgcaggtccgcgatgaattc
gccaagttgtcttttggccggccaatcaccagcgtggccgtttatggcggcaagccgatt
cgctctcagatcgacaagttgaaagcaggtgtccacgtagtggttggtacacccggtcgc
gtgctcgatcacctggcccgcggcaccattcaaatggacgaacttgaaatcgtcgtcctg
gacgaagcggaccgaatgctcgatatcggttttcgccccgatatcgaaaagatcctgcgc
cgttgcccgaaagaccggcaaacgctgctgctcagtgcgaccgttcccccgccgatcgcc
aagttggccgagcggtatatggtcgaaccgacgacgctcaatttctcgcccaaggaactc
gcggtcgaaacgatcgagcaattctattacacggttgatccgcagcgcaaattcgatctg
ctccaacgcttgatcgagcgcgaaaagccgcggcaagccatcgtcttctgtcgtaccaag
cgtggtaccgaaaagatcttccaacgtttgagcaagaagttgccgggcgtaggttgcatg
cacggcgacatgaatcaaggcggtcgcgaccgtgtgatgcgtggctttcgtgacggcacc
atctcgtacctaattgccaccgacgttgtcggccgcggtatcgatgtgtccgctgtttcg
cacattatcaatttcgatatccccgccttcagcgacgactacgtgcatcgcgtcggccgc
acgggtcgcatggggcgcgaaggagtggcgtatacgttcgtcgctcccgatgaagggccg
gaactgacgcgcatcgagcagcggattaacatccagctcaagcgtggcgagatggagaac
ttcgaaatggtcagcgcgccgatgccgctgaaccgcgcgatcgatagcgagacaggcgaa
gccatcgatgtgcctgcaccaccgccgctcccgacgaatctgatgcgtcgtccacccaag
cgttatcgccgcggcgtgtga
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