Arthrobacter agilis: NCTC2676_1_02197
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Entry
NCTC2676_1_02197 CDS
T07056
Name
(GenBank) Putative ribonuclease J Rv2752c
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aagi
Arthrobacter agilis
Pathway
aagi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aagi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC2676_1_02197
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aagi03019
]
NCTC2676_1_02197
Messenger RNA biogenesis [BR:
aagi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NCTC2676_1_02197
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
Lactamase_B_2
RMMBL
Anti-Pycsar_Apyc1
DUF459
Motif
Other DBs
NCBI-ProteinID:
VDR32892
LinkDB
All DBs
Position
1:2393634..2395268
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AA seq
544 aa
AA seq
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MRIVALGGIGEIGRNMTVFEFDGKLLIVDCGVLFPEEHQPGINVILPDFSSIRDRLDDVV
AVVLTHGHEDHIGGVPYLLKERADIPLVGSRLTLAFIEAKLKEHRITPKTVQVKEGDRRT
MGGFDLEFVAVNHSIPDSLAVAIRTAAGMVLHTGDFKMDQFPLDRRITDLGSFARLGAEG
VDLFLTDSTNADVPGFTTSEKDLGPAIDAVFRTAPRRIIVSSFASHIHRIQQIIDTAHRH
RRKVAFVGRSMVRNMTIAADLGYLNIPQGLLVDFKKLERSDDHKVVLICTGSQGEPMAAL
SRMANKDHAIRISEGDTVLLASSLIPGNENAIYGIINALTEIGANVVHKGNAKVHVSGHA
SAGELAYCYNIVKPRNVMPVHGEWRHLRANSEIAVATGVDPRNVVIAQDGVTVDLARGRA
TISGKVDAGLVFVDGDSVGGITEEDLVERRRLAEEGVVTVLAIIDPDNGEIVEAPEFFTK
GFSCSNEDLDKAGAAVEKALRDAASNRQGGRRQDPEDIIERATANWMRRFYNRQPVVTAI
VVDA
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgcgcatcgtcgccctcggcgggatcggtgagatcggcagaaacatgaccgtgttcgag
ttcgacggcaagctgctgatcgtcgactgcggcgtcctcttcccggaggagcaccagccg
ggcatcaacgtcatcctccccgatttctcctccatccgggaccggctcgacgacgtcgtc
gccgtcgtcctcacgcacggccacgaggaccacatcggaggtgtcccgtacctcctgaag
gagcgggcggacatccccctggtcggttcgcgcctgacactggccttcatcgaggcgaag
ctcaaggagcaccgcatcaccccgaagaccgtccaggtcaaggagggcgaccgcaggacc
atgggcggcttcgatctcgagttcgtcgccgtcaaccactccatccccgacagcctcgcc
gtcgccatccgcaccgcggccgggatggtgctgcacacgggtgacttcaagatggaccag
ttcccgctggaccgccgcatcacggacctcggctcgttcgcgcgcctcggcgccgagggt
gtggacctgttcctgaccgactccaccaatgcggacgtcccgggcttcacgacgtcggag
aaggacctcggcccggctatcgacgccgtgttccgcaccgccccgcgccgcatcatcgtc
tcgagcttcgcgagccacatccaccgcatccagcagatcatcgacaccgcgcaccgccac
cgccgcaaggtggcgttcgtgggacgctcgatggtccgcaacatgaccatcgcggcggac
ctgggctacctcaacatcccgcagggcctgctcgtggacttcaagaagctcgagcgcagc
gacgaccacaaggtggtcctgatctgtaccggatcgcagggcgagcccatggccgccctg
tcccgcatggccaacaaggaccacgcgatccgcatcagcgagggtgacacggtcctgctc
gcgagctcgctcatcccgggcaacgagaacgcgatctacggcatcatcaatgcactcacc
gagatcggtgccaacgtggtccacaagggcaacgccaaggtccacgtctccggccacgcg
agcgccggtgagctcgcctactgctacaacatcgtcaagccgcgcaacgtcatgcccgtg
cacggcgagtggcgccacctccgcgcgaattcggagatcgccgtcgcgaccggcgtcgac
ccgcgcaacgtcgtcatcgcccaggacggcgtgaccgtcgacctcgcccgcggccgcgcc
accatctcgggcaaggtcgacgccggcctcgtgttcgtcgacggcgacagcgtcggcggc
atcaccgaggaggacctcgtggagcgccggcgcctggccgaggagggcgtggtcacggtc
ctcgcgatcatcgaccccgacaacggcgagatcgtcgaggcgcccgagttcttcaccaag
ggcttctcgtgctccaacgaggacctcgacaaggccggcgcagcagtcgagaaggctctg
cgcgacgccgcttcgaaccggcagggcggccgccgccaggaccccgaggacatcattgaa
cgggccacggcgaactggatgcgccggttctacaaccggcagccggtcgtcaccgccatc
gtcgtcgacgcctga
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