Arthrobacter agilis: NCTC2676_1_02335
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Entry
NCTC2676_1_02335 CDS
T07056
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aagi
Arthrobacter agilis
Pathway
aagi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aagi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCTC2676_1_02335 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aagi03021
]
NCTC2676_1_02335 (rpoC)
03400 DNA repair and recombination proteins [BR:
aagi03400
]
NCTC2676_1_02335 (rpoC)
Enzymes [BR:
aagi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCTC2676_1_02335 (rpoC)
Transcription machinery [BR:
aagi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCTC2676_1_02335 (rpoC)
DNA repair and recombination proteins [BR:
aagi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCTC2676_1_02335 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Cluap1
Motif
Other DBs
NCBI-ProteinID:
VDR33030
LinkDB
All DBs
Position
1:complement(2529198..2533091)
Genome browser
AA seq
1297 aa
AA seq
DB search
MSSESSFGLMRIGLATADEIRGWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPSRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITSVDEENRHAELPNLQAEHDLEKKQMTDQRDSDIAAIAKDLEDE
LARLEGEGAKAADKKKARDSADRQMANVRKRADADIERLVQVWERFKTLKVADLEGDEGL
YRELRDRYGLYFEGSMGAEAIKKRLENFDMPAEAEMLRDIIQNGKGQRKTRALKRLKVVN
AFLTTTNSPLGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERYR
PQVWDVLEEIITEHPVLLNRAPTLHRLGIQAFEPQLVEGKALQLHPLVCGAFNADFDGDQ
MAVHLPLSPEAQAEARILMLSSNNILKPSDGRPVTLPSQDMIIGLHHLTTKREGSAGEGR
VFTSVAEAIMAFDMGSLHLNSVVRIRVDNFVPSADIAAPEGWESGTPALIETSLGQVLFN
ETLPLDYPWVEKVADKGQLSTIVNDLAERYPKVVTAATLDNLKDAGFYWATRSGVTVAIS
DISAPINKAGIMEGYETQAAKVQSQFDKGLIADEERRQELIDIWNKATNEVAASMRAAMP
KDNTINRMVSSGARGNWLQVRQIAGIRGLVANPKGEIIPRPIKSSYREGLSVLEYFIATH
GARKGLADTALRTANSGYLTRRLVDVSQDVIVREDDCGTERGLKVTIAVPNADGELVLHE
EVENSAYARTLATDVVDSKGAVLAPAGSDLGDVVIGELFEAGISEIKVRSVLTCESSVGT
CALCYGRSLATGKTVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASAEDITQGLPRIQ
ELFEARTPKGVAPISEVAGRVTIEDAEKQLRLVVTPDDGSEEIAYPVLRRARLLVSDGDH
VEVGQQLVFGAVDPKQILRILGPRKAQEFLVDEVQRVYRSQGVGIHDKHVEVIVRQMLRR
VTVIESGESDLLPGELAERRRFEDENRRVVSEGKKPASGRPELMGITKASLATESWLSAA
SFQETTRVLTQAAMEGKSDPLLGLKENVIIGKLIPAGTGLDRYTKVTVEPTEEAKANLFT
GPSAFSDFDYAGVEGGLSPEFHAIPLDDYDMGNSDFR
NT seq
3894 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcgaatcctccttcggcctcatgcgaatcggccttgccaccgcggacgaaatc
cgcggttggtcctacggcgaggtcaagaagccggaaaccatcaactaccgcacgctcaag
cccgagaaggacggcctcttctgcgagaagatcttcggcccttcccgagactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtcacccgtgccaaggtgcgccgtgagcgcatgggccacatcgagctcgccgctccc
gtcacccacatctggtacttcaagggcgttccctcacgcctgggctacctgctcgacctg
gcgccgaaggacctcgagaaggtcatctacttcgccgcctacatgatcacctcggtggac
gaggagaaccgccacgccgaactgccgaacctccaggccgagcacgacctcgagaagaag
cagatgacggaccagcgtgactccgacatcgccgcgatcgccaaggacctcgaggacgaa
ctcgcccgcctcgagggcgaaggcgccaaggccgcggacaagaagaaggcccgcgactcg
gccgaccgccagatggcgaacgtccgcaagcgtgcggacgctgacatcgagcgtctcgtc
caggtatgggagcgcttcaagaccctcaaggtcgccgacctcgagggcgacgaaggcctg
taccgcgagctgcgcgaccgctacggcctgtacttcgagggctccatgggtgccgaggcg
atcaagaagcgcctcgagaacttcgacatgcccgccgaagcagagatgctgcgcgacatc
atccagaacggcaagggccagcggaagacgcgcgccctgaagcgcctcaaggtggtcaac
gccttcctgacgacgacgaacagccccctgggcatggtcctcgacgccgttccggtgatc
ccgccggagctgcgcccgatggtccagctcgacggtggccgcttcgcgacgtccgacctc
aacgacctgtaccgccgcgtcatcaacaggaacaaccgtctcaagcgcctgctggatctc
ggagcccccgagatcatcgtgaacaacgagaagcgcatgctgcaggaagcggtcgactcc
ctgttcgacaacggccgtcgtggccgtccggtcaccggaccgggcaaccgtcccctgaag
tccctctcggacatgctgaagggcaagcagggtcgtttccgccagaacctcctcggcaag
cgtgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagagcgccaagcgcatggtcgagcgttaccgc
ccccaggtgtgggacgtgctcgaagagatcatcaccgagcaccccgtgctgctgaaccgt
gcacccaccctgcaccgtctcggcatccaggcgttcgagccgcagctcgtcgagggcaag
gcactccagctccacccgctggtctgcggcgccttcaacgcggacttcgacggcgaccag
atggcagtgcacctgccgctgagccccgaggcccaggccgaggcgcgcatcctgatgctc
tcctcgaacaacatcctgaagccgtccgacggccgtccggtcaccctgccctcgcaggac
atgatcatcggtctgcaccacctcaccaccaagcgtgagggaagtgccggcgaaggccgc
gtcttcaccagcgtcgccgaggccatcatggcgttcgacatgggctcgctccacctcaac
tcggtggtccggatccgcgtcgacaacttcgtgccgagtgcggacatcgcagctcccgag
ggctgggagtcggggacacctgcgctcatcgagacgtcgctcgggcaggtcctgttcaac
gagacccttcccctggactacccgtgggtggagaaggtcgccgacaagggccagctctcg
acgatcgtcaacgatctcgccgagcggtacccgaaggtcgtcacggcggcgacgctggac
aacctgaaggacgccggtttctactgggccacgcgctcgggcgtcaccgtcgccatctcg
gacatctccgcgccgatcaacaaggccgggatcatggagggctacgagacgcaggccgcc
aaggtccagtcgcagttcgacaagggcctcatcgccgacgaggagcgccgccaggagctc
atcgacatctggaacaaggccaccaacgaggttgccgcctcgatgcgtgccgcgatgccg
aaggacaacaccatcaaccgcatggtgtcctccggtgcccgtggtaactggctgcaggtc
cgtcagatcgccggtatccgtggcctcgtggccaacccgaagggcgagatcatcccgcgc
ccgatcaagtcctcgtaccgcgagggcctgtcggtcctggagtacttcatcgcgacccac
ggtgcccgtaagggtcttgccgacaccgcgctgcgtaccgccaactcgggctacctcacc
cgtcgcctggtcgacgtctcacaggacgtcatcgtccgcgaggacgattgcgggacggag
cgtggcctcaaggtcacgattgccgtgccgaacgccgacggtgagctggtgctgcacgag
gaggtcgagaactcggcgtacgcccgtacgctggcgaccgacgtcgtcgactccaagggc
gctgtgctggctcccgcgggatccgatctgggcgacgtcgtcatcggtgagctgttcgag
gcgggtatctccgagatcaaggtccgctcggtcctcacctgtgagtccagcgtcggcacc
tgtgccctctgctacggccgttcgctcgcgaccggcaagaccgtggacatcggagaggcc
gtcggcatcatcgccgcgcagtcgatcggtgagcccggcacgcagctgaccatgcgtacc
ttccacaccggtggtgtcgcatcggcggaggacatcacccagggtctgccccgtatccag
gagctgttcgaggcgcgtacaccgaagggtgtcgccccgatctccgaggtcgccggacgc
gtcaccatcgaggatgccgagaagcagcttcgcctggtcgtcacgcccgacgacgggtcc
gaggagatcgcgtacccggtcctgcgccgtgcacgcctcctggtgtccgacggcgaccac
gtcgaggtcgggcagcagctcgtcttcggtgcggtcgacccgaagcagatcctccggatc
ctcggcccccgcaaggcccaggaattcctggtggacgaggtccagcgcgtgtaccgcagc
cagggtgtgggcatccacgacaagcacgtggaagtcatcgtccggcagatgctgcgccgc
gtcaccgtgatcgagtccggcgagtcggacctgctccccggtgagcttgccgagcgtcgc
cgcttcgaggacgagaaccgtcgcgtggtgtccgagggcaagaagccggcctcgggccgt
ccggagctcatgggtatcaccaaggcgtcgctcgccaccgagtcgtggctgtcggccgct
tccttccaggagaccacgcgtgtcctcacgcaggccgccatggaaggcaagagcgatccg
ctgctgggtctcaaggagaacgtcatcatcggtaagctcatcccggccggtaccggcctg
gaccgctacacgaaggtcacggtcgaacccaccgaggaagccaaggcgaatctcttcacc
ggtcccagcgcgttcagcgacttcgactacgccggtgtcgagggcggcctcagccccgag
ttccacgcgatcccgctggacgactacgacatgggcaacagcgacttccgctag
DBGET
integrated database retrieval system
