Arthrobacter agilis: NCTC2676_1_02393
Help
Entry
NCTC2676_1_02393 CDS
T07056
Symbol
deaD
Name
(GenBank) Cold-shock DEAD box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
aagi
Arthrobacter agilis
Pathway
aagi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aagi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC2676_1_02393 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aagi03019
]
NCTC2676_1_02393 (deaD)
03009 Ribosome biogenesis [BR:
aagi03009
]
NCTC2676_1_02393 (deaD)
Enzymes [BR:
aagi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCTC2676_1_02393 (deaD)
Messenger RNA biogenesis [BR:
aagi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCTC2676_1_02393 (deaD)
Ribosome biogenesis [BR:
aagi03009
]
Prokaryotic type
rRNA helicases
NCTC2676_1_02393 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
DUF6702
Motif
Other DBs
NCBI-ProteinID:
VDR33084
LinkDB
All DBs
Position
1:complement(2587089..2589014)
Genome browser
AA seq
641 aa
AA seq
DB search
MPENLSEQITDTTPSAVTEATAAAPAAAPEDDGVDIRFTDLNLDGRVLAALTDVGYEKPS
PIQAATIPALLEGRDVVGLAQTGTGKTAAFAIPALSKMAELADINGGPSKNTQVLVLAPT
RELALQVAEAFTSYAKHMEGFTVLPVYGGSPYGPQLNGLRRGAQVVVGTPGRVIDHIEKG
SLDLSNLEYVVLDEADEMLRMGFAEDVEKILSSTPDEKQVALFSATMPPAIRRIAKKYLN
DPAEISVKGKTTTGTNTRQRYLQVMGPHKLDAMTRILEVEDYDGIIAFVRTKMATEDLAD
KLRSRGFSAAAINGDIPQQQRERTVEALRDGKIDILVATDVAARGLDVDRISLVVNYDIP
HDTESYVHRIGRTGRAGRSGDAILFITPREKYLLRSIEKATRQPVEQMQLPSTAKINELR
LNKFAEKITKTLATEDVSLFRDLIANYEREHDVPAAEIAAALAIMAQGGQPILVQDIPVA
PAGQRERAEGRKDAFGSRGPTRTLTEGNATYRIAVGRRQRVMPGSIVGAIANEGGISSSQ
IGGIDIRADHSLVELPADLSKDQLRALSRTRIGGELIHLELDKGRKPSGNRGAGEFKKPF
KKDFPKRDGDTRFSGDASRKPRHGKGAGAGAGRSNAQSEQW
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaaaacctgtccgagcagatcaccgacaccactccatcagccgtcaccgaggcg
accgctgcggctcccgccgccgcgccggaggacgacggcgtggacatccgcttcaccgac
ctcaacctcgacggccgcgtcctcgccgccctcaccgacgtcggctacgagaagccctca
cccatccaggcagcgaccatccccgcgctgctcgaaggccgcgacgtcgtcggcctcgcc
cagaccggcaccggcaagacggcagcattcgccatccccgcgctgtccaagatggccgag
ctcgccgacatcaacggcggccccagcaagaacacgcaggtcctcgtgctcgccccgacc
cgcgagctcgcgctccaggtcgccgaggcgttcacgtcctacgccaagcacatggagggc
ttcaccgtcctccccgtctacggtggatcgccctacggcccgcagctgaacggcctccgt
cgtggcgcgcaggtcgtcgtcggcactccgggccgcgtcatcgaccacatcgagaagggc
tcgctcgacctgtccaacctcgagtacgtggtcctggacgaggctgatgagatgctgcgc
atgggcttcgccgaggacgtcgagaagatcctctcctcgacgcccgacgagaagcaggtc
gccctgttctccgcgaccatgcccccggccatccgccgcatcgccaagaagtacctgaac
gaccccgccgagatctcggtcaagggcaagacgacgacgggcaccaacacgcgccagcgc
tacctgcaggtcatgggcccgcacaagctggacgcgatgacccgcatcctcgaggtggag
gactacgacggcatcatcgccttcgtccgcaccaagatggctaccgaagacctggcggac
aagttgcgttcacggggcttctcggctgcagccatcaacggagacatcccccagcagcag
cgtgagcgcacggtcgaggccctgcgcgacggcaagatcgacatcctcgtcgccacggac
gtcgccgcccgtggactcgacgtggaccgcatctcgctcgtggtgaactacgacatcccg
cacgacaccgagtcctacgtgcaccgcatcggccgcaccggccgcgcgggccgctcgggt
gacgcgatcctcttcatcaccccgcgggagaagtacctgctccggtcgatcgagaaggcc
acgcgccagccggtcgagcagatgcagctgccctccacggccaagatcaacgagctgcgc
ctgaacaagttcgcggagaagatcaccaagacgctggccaccgaggacgtttcgctgttc
cgtgacctgatcgcgaactacgagcgcgagcacgacgtgccggcggccgagatcgctgcg
gcactcgccatcatggcgcagggcggccagccgatcctcgtccaggacatccccgtggcc
cccgccggccagcgcgagcgcgccgagggtcgcaaggatgccttcgggtcccgcggcccg
acgcgcaccctcaccgagggcaacgccacctaccgcatcgcggtgggacgtcgccagcgc
gtgatgcccggctcgatcgtcggcgccatcgccaacgagggtggaatctcctcctcgcag
atcggtgggatcgacatccgcgcggaccacagcctcgtcgagcttccggccgacctgtcg
aaggaccaactgcgcgccctctcccggacccgtatcggtggggagctcatccacctcgag
ctcgacaagggccgcaagccctcgggtaaccgcggcgcgggcgagttcaagaagcccttc
aagaaggacttcccgaagcgcgacggtgacacccggttctcgggcgatgccagccggaag
ccccggcacggcaagggcgcaggggcgggcgcaggacgctccaacgcacagtccgagcag
tggtag
DBGET
integrated database retrieval system
