Aggregatibacter actinomycetemcomitans HK1651: CF65_00265
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Entry
CF65_00265 CDS
T03184
Name
(GenBank) transcription termination factor Rho, putative
KO
K03628
transcription termination factor Rho
Organism
aah
Aggregatibacter actinomycetemcomitans HK1651
Pathway
aah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CF65_00265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aah03021
]
CF65_00265
03019 Messenger RNA biogenesis [BR:
aah03019
]
CF65_00265
Transcription machinery [BR:
aah03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CF65_00265
Messenger RNA biogenesis [BR:
aah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CF65_00265
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
S1CSD-TOTE-2
AAA_22
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
AHN70888
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All DBs
Position
185447..186646
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AA seq
399 aa
AA seq
DB search
MGLENLARLRKQDIIFAILKQHAKGGEDIFGGGVLEILPDGFGFLRSDDSSYLAGPDDIY
VSPSQIRRFNLQTGDKIEGKIRPPKEGERYFALLKVDQVNDDKPEVSRSKILFENLTPLH
ANSRLRMERGNGSTEDLTARILDLASPIGKGQRGLIVAPPKAGKTMLLQNIAQSITHNYP
DVELIVLLIDERPEEVTEMQRSVKGEVIASTFDEPATRHVQVAEMVIEKAKRAVEHKKDV
VILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL
VDTGSKMDEVIFEEFKGTGNMELHLSRKIAEKRVFPAIDFNRSGTRKEDLLTTPDELQKM
WILRKILNPMGEVEAMEFLIDKLAVAKTNEEFFEIMKRS
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgggtttggaaaatttagcccgtttacgcaaacaagacattatttttgcgattttgaaa
cagcacgccaaaggtggggaagatattttcggcggcggcgtgttggaaattttgccggac
ggtttcggtttcctgcgttccgacgacagttcctatttagccggcccggatgatatttat
gtcagcccgagccaaattcgtcgtttcaatttacagaccggggacaaaatcgaagggaaa
attcgaccgcctaaagaaggcgaacgctactttgccctccttaaagttgaccaagtcaac
gacgacaaaccggaagtatcccgcagcaaaatccttttcgaaaacttaaccccattacac
gccaactcccgtttaagaatggaacgcggcaacggttctaccgaagatttaaccgcccgt
attttagatttggcctccccgattggtaaaggtcagcgtggtttgatcgtggcgccgcca
aaagcgggtaaaaccatgttgctgcaaaatatcgcacaaagtatcacgcacaattaccct
gatgtcgaacttatcgtcttgctgattgatgaacgtccggaagaggtaacggaaatgcaa
cgttccgtgaaaggcgaagtcatcgcgtccaccttcgacgaaccggcgacccgtcacgtc
caagtggcggaaatggttattgaaaaagccaaacgtgccgtcgaacacaaaaaagacgta
gtgattttactcgattccatcactcgtttagcgcgcgcttacaacaccgtaaccccggct
tccggcaaaattttatccggtggtgtggacgccaacgctctacatcgcccaaaacgcttt
tttggtgcggcacgtaacgtagaagaaggcggtagcttaaccattatcgccaccgcgctg
gtggataccggttcgaaaatggacgaagtaatcttcgaagaatttaaaggcaccggtaac
atggaattgcatctttcgcgtaaaatcgcggaaaaacgcgtgttcccggcaattgacttc
aaccgttcaggcacccgtaaagaagacttgcttactacccctgacgagttacaaaaaatg
tggatcctgcgcaaaatccttaacccaatgggcgaagtggaagccatggaattccttatc
gacaaactcgccgtagcaaaaaccaacgaagaattttttgagattatgaaacgctcataa
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