Aggregatibacter actinomycetemcomitans HK1651: CF65_00356
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Entry
CF65_00356 CDS
T03184
Name
(GenBank) DNA-directed RNA polymerase, beta' chain,putative'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aah
Aggregatibacter actinomycetemcomitans HK1651
Pathway
aah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CF65_00356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aah03021
]
CF65_00356
03400 DNA repair and recombination proteins [BR:
aah03400
]
CF65_00356
Enzymes [BR:
aah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CF65_00356
Transcription machinery [BR:
aah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CF65_00356
DNA repair and recombination proteins [BR:
aah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CF65_00356
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AHN70959
LinkDB
All DBs
Position
239077..243345
Genome browser
AA seq
1422 aa
AA seq
DB search
MKDLVKFLKAQSKTAEDFDVIKIGLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCA
RIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKS
LPSRIGLLLDMPLRDIERVLYFESYIVIEPGMTDLERGQLLTEEQYLDAEDRWQDEFDAK
MGAEAIQALLRGIDLEAECENLREELQETNSETKRKKITKRLKLLEAFLQSGNKPEWMVM
TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLIAPDIIVRNEKRML
QESVDALLDNGRRGRAITGSNRRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP
YLHLHQCGLPKKMALELFRPFIYAKLESRGYATTIKAAKKMVEREDAIVWDILAEVIREH
PILLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTLEAQLE
ARALMMSTNNILSPANGDPIIVPSQDVVLGLYYMTREKVNGKGEGMLLQDPREAEKAYRT
GQAELHSRVKVRITEYVKNDAGEFEPKTTLTDTTIGRAILWMIAPKGMPFSLFNQTLGKK
AISKLINESYRRLGLKASVMFADQIMYTGFAYAARSGSSVGIDDMVIPAKKYEIISAAEE
EVAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMENLSSEEVINREGKPEKQASF
NSIFMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGTHEGIVMTPLIEGGDEKVPLRELV
LGRVAAEDILKPGTEDVLIPRNTLLDEKLCDVLDENSVDSVKVRSVVTCNTDLGVCAKCY
GRDLARGHLINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASAAAKESSVQVKNNGTLR
LANAKFVTNNEGKLVLTSRNTELTVVDNFGRTKEHYKVPYGAILSKGDHQEVNAGETIAN
WDPHTMPVISEVGGFVKFVDIVDGLTVTRQTDELTGLSSIVVQDVGERATAGKDLRPAIK
LVDEKGNDVLVSGTDVAAQYFLPSKAIVTLDDGAEVHVGDPLARIPQESVGTKDITGGLP
RVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLITPTEGEVYEEMIPKWRQLNVFE
GEMVQCGDLISDGAETPHDILRLRGVHAVTEYIVNEVQEVYRLQGVKINDKHIEVIVRQM
LRKAIVTKAYDSEFLEGEQVEVARVKIVNRKREAEGKPPVEYERELLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGFAYHRNRHKNPTAIADDE
VPVRLSAADEEEIASEFVMTSEDASASLTEMLNMVEEDNHAE
NT seq
4269 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttagttaaatttttaaaagcacaatcaaaaaccgctgaagattttgatgtg
attaaaatcggtttagcctcacctgacatgatccgttcttggtcatacggtgaagttaaa
aagcctgaaacaatcaactatcgtacctttaaaccggaacgtgacggtcttttctgtgcc
cgtattttcggaccggtaaaagattacgaatgtttgtgcggtaagtacaaacgcttaaaa
caccgtggcgtgatttgtgaaaaatgtggcgttgaagtgactcaaaccaaagtacgtcgt
gaacgtatggggcacatcgaattagcctctccggtggcgcacatttggtttttaaaatcc
ctgccgtcccgtatcggtttgttgttagatatgccattgcgtgatattgaacgcgtgctt
tattttgaatcttacattgtgatcgaaccgggtatgaccgatctggaacgcggtcagtta
ttaaccgaagagcaatatcttgacgcggaagaccgctggcaggatgagttcgacgcaaaa
atgggtgcggaagcgatccaagcgttattgcgcggtatcgatttagaagcggaatgcgaa
aatttacgtgaagaattacaagaaaccaattccgaaaccaaacggaagaaaatcacgaag
cgcttaaaattattagaagctttcctgcaatccggcaacaaaccggaatggatggtgatg
accgtattgccggtacttccgccggatttacgtccgttagtgccgttagacggcggccgt
ttcgccacttccgatttgaacgatttatatcgtcgtgtgatcaaccgtaacaaccgttta
aaacgtttattggatcttatcgcaccggatattatcgtgcgcaacgaaaaacgcatgttg
caggaatccgtggacgcgttattggataacggtcgtcgcggtcgtgccatcaccggttct
aaccgtcgtccgttaaaatcattggcggatatgattaaaggtaaacaaggtcgcttccgt
caaaacttgttgggtaaacgtgttgactactccggtcgttccgtaatcaccgtgggtcca
tacttgcacttacaccaatgtggtttgccgaagaaaatggcattggaattattccgtccg
tttatctacgcgaaattagaaagtcgtggttatgcaacaacgattaaagcggcgaaaaaa
atggtggaacgcgaagacgccatcgtttgggatattctggcggaagtcattcgcgaacat
ccgattctgttgaaccgtgcaccgacacttcaccgtttgggtattcaagcctttgaacca
atcttaatcgaaggtaaagcaatccaattgcacccgcttgtctgtgcggcgtttaacgcg
gacttcgacggtgaccaaatggcggtgcacgttccgttgacgcttgaagcgcaattagaa
gcgcgtgcgttaatgatgtccaccaataacattctttctccggcgaacggcgatccgatt
atcgttccgtcacaagacgtggtgttagggctttactacatgacccgcgaaaaagtgaac
ggtaaaggtgaaggtatgctattgcaagatccgcgcgaagcggaaaaagcctatcgtacc
ggtcaggcagaattgcattcccgcgtgaaagtgcgtattaccgaatatgtgaaaaacgac
gccggtgagtttgaaccgaaaacaaccctaaccgatactaccatcggtcgtgccatctta
tggatgatcgcgccgaaaggcatgccgtttagcttgtttaaccaaactcttggcaaaaaa
gccatttctaagttaattaacgaaagctatcgtcgcttaggcttaaaagccagcgtcatg
ttcgccgaccaaatcatgtacaccggttttgcttacgcggcacgttccggttcctccgtg
ggtatcgacgacatggtgattccggcgaagaaatacgaaattatttctgcggcggaagaa
gaagttgccgaaattcaggaacaattccaatccggtcttgtgacagcgggcgaacgttat
aacaaagtgattgatatttgggcggcagccaatgaacgcgttgccaaagccatgatggaa
aacctgtcttcggaagaagtgattaaccgtgaaggtaaaccggaaaaacaagcctctttc
aacagcatctttatgatggcggattccggtgcccgtggttccgcagcacagattcgtcag
ttggcgggtatgcgtggtttgatggcgcgtccggacggttccattatcgaaaccccaatc
actgcaaacttccgtgaagggttgaacgttttacaatactttatttctacccacggtgcg
cgtaaaggtttggcggataccgcgttgaaaaccgcgaactccggttacttaacccgccgt
ttggttgacgtggcacaggatttagtgatcatcgaagatgactgtggtacgcacgaaggt
atcgtgatgaccccgttaatcgaaggtggcgacgaaaaagttcctctgcgcgaattggta
ttaggtcgtgtggcggcggaagatatcttaaaaccgggtacggaagacgtattaattcca
cgcaataccttgcttgatgaaaaactttgtgatgtgttggatgaaaactccgtggacagc
gtaaaagtgcgttccgtcgtaacctgtaacaccgatttaggcgtttgtgcgaaatgttac
ggtcgtgacttggcgcgcggtcacctgattaaccaaggtgaagcggtaggtgttatcgcg
gcacaatctatcggtgaaccgggtacacagttaaccatgcgtacgttccacatcggtggt
gcggcatccgcggcagccaaagaatccagcgtacaagtgaaaaacaacggcacattgcgt
ttagccaatgcaaaattcgtgacgaacaacgaaggtaaattggtgctgacttcccgtaat
accgaattgaccgttgtggataatttcggacgtaccaaagagcactataaagtgccttac
ggtgcgattttaagcaaaggcgatcaccaagaagtgaatgcaggcgaaaccatcgctaac
tgggatccgcataccatgccggttatttctgaagtgggcggtttcgtgaaattcgtggac
atcgtagacggtttaaccgtcacccgtcaaaccgacgaactcaccggtctttcctctatc
gtggtacaagacgtgggtgaacgtgccacagccggtaaagatctgcgccctgcaatcaaa
ctagttgatgagaaagggaatgacgtattggtgtcgggcaccgacgttgcggcacaatat
ttcttgccaagtaaggctatcgtgaccttggatgacggcgcggaagtgcatgtgggtgac
ccgttggcacgtattccacaagaatctgtcggaacaaaagatattaccggcggtcttccg
cgcgtggcggatttatttgaagcgcgtaaaccgaaagaacctgccatcttggcggaaatt
tccggtatcgtgtccttcggtaaagaaaccaaaggtaaacgtcgcttattgattaccccg
acggaaggtgaagtgtacgaagaaatgatcccgaaatggcgtcaactgaacgtattcgaa
ggtgaaatggtacaatgcggcgatttaatctccgacggtgcggaaacgccacatgacatc
ttacgtttacgaggtgtccatgccgtaaccgaatacatcgttaacgaggtacaggaagtt
taccgcttacaaggggtaaaaattaacgataaacacatcgaagtgatcgtacgccaaatg
ttgcgtaaagctatcgttaccaaagcctacgactccgaattcctcgaaggggaacaagtg
gaagtggcgcgtgtgaaaatcgttaaccgcaaacgcgaagcagaaggcaaaccgccggtt
gaatatgaacgcgaattattgggtatcaccaaagcgtccttggcaaccgagtccttcatc
tctgcggcctccttccaggaaaccacccgtgtgttaacggaagcggcggttgccggtaaa
cgcgatgaattacgtggcttgaaagaaaacgtcatcgtaggtcgtttgatcccggcgggt
accggttttgcgtatcaccgaaatcgccataaaaacccgacagccatcgcggatgacgag
gtgccggtaagattatcggcggcggatgaagaagaaattgcttccgaattcgtgatgacc
tccgaagatgcgtcagcaagtttaaccgaaatgttaaacatggtagaagaagacaatcac
gcggaataa
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