Aggregatibacter actinomycetemcomitans HK1651: CF65_00927
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Entry
CF65_00927 CDS
T03184
Name
(GenBank) ATP-dependent DNA helicase RecQ, putative
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aah
Aggregatibacter actinomycetemcomitans HK1651
Pathway
aah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CF65_00927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aah03019
]
CF65_00927
03400 DNA repair and recombination proteins [BR:
aah03400
]
CF65_00927
Enzymes [BR:
aah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CF65_00927
Messenger RNA biogenesis [BR:
aah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CF65_00927
DNA repair and recombination proteins [BR:
aah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CF65_00927
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Cas3-like_C_2
HEM4
Motif
Other DBs
NCBI-ProteinID:
AHN71398
LinkDB
All DBs
Position
635951..637840
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AA seq
629 aa
AA seq
DB search
MSDLNPSKPTKSAVDFADESSVNSTALHASALHVLHSVFGYQSFRKGQQEIINAVLNGQD
CLVIMATGTGKSLCYQIPALCFDGTTLVVSPLISLMKDQVDQLRANGVEADYLNSTQTFE
EQQQVQNRAISGQLKLLYLSPEKVMTSSFFQFISLCQVSFIAIDEAHCISQWGHDFRPEY
TQLGGLKGSFPNVPIMALTATADQTTQQDILQNLRLNRPHFYVGSFDRPNIRYTLVEKFK
PMEQLCRFVLAQKGKSGIVYCNSRNKVERIAETLYNKGVRAAAYHAGMENGLREKVQRDF
QRDNIQVVVATIAFGMGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYDP
ADYVWLNKMLMEKPETPQRQIEQHKLQAIGEFAESQTCRRLVLLNYFGEHRQTPCQNCDI
CLDPPKKYNGLLDAQKIMSAIYRTGQCYGAHYVIAVLRGMNNQKIRDQHHDQLSVYGIGK
EHGTEYWQSVLRQLVHLGLVRQIIGEYGNTLQLTENAKPILRGEEPLELATPRLSSIVTT
AMTPKSAVGSYDKDLFARLRFLRKQIADKENIPPYIVFNDATLQEMAQYQPVSNIEMLQI
NGVGAIKLERFGQAFLTLIREHKSARAGE
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaccttaacccgtccaaaccaacaaaaagtgcggtagattttgccgatgaatcg
tcggtaaattccaccgcacttcatgcttccgcattgcacgttttgcattcggttttcggc
tatcaatccttccgcaaagggcagcaggaaatcatcaatgcggtacttaacgggcaggat
tgtttggtgattatggcgacgggcacgggcaaatcgttgtgttatcaaattcccgccctt
tgttttgacggcacgacgctggtggtttcaccgttgatttccctgatgaaagaccaagtg
gatcagctgcgcgccaacggcgtggaagcggattatttaaattccacacaaaccttcgaa
gaacagcaacaggtgcagaatcgggcaatttccgggcaattaaaattattgtatttatcg
ccggaaaaagtcatgaccagcagctttttccaatttatttctttatgccaagtgagtttt
atcgccattgatgaagcgcactgcatttcccaatggggacacgatttccgtcccgaatat
acccaactcggcggcttaaaaggcagctttccgaacgtgccgatcatggcgctcactgct
acagcggatcagactacacaacaagacatcctgcaaaatctccggctaaatcgaccgcac
ttttatgtgggcagcttcgatcgcccgaacattcgttacaccttggtggaaaaattcaaa
cccatggaacagctttgccgtttcgtgctggcgcaaaagggcaagagcggcattgtgtat
tgcaacagccgcaataaagtggaacgtatcgcggaaaccctgtacaacaaaggcgtgcgg
gcggcggcgtatcatgccggcatggaaaacggcttgcgcgaaaaagtacaacgggatttt
cagcgtgacaacattcaagtggtggtggcgaccattgcgttcggcatgggcattaataaa
tccaacgtgcgctttgtggcacattttgacctgccgcgcagcatcgaatcctactatcag
gaaaccggtcgtgcggggcgcgatgatttgccggcggaagcggtattgttttacgacccg
gcagattatgtgtggctcaacaaaatgctgatggaaaagccggaaacgccgcaacggcag
attgaacagcacaaattgcaagccatcggtgaatttgccgaaagccaaacctgccgtcgt
ttggttttattgaattatttcggcgaacatcgccaaacgccctgtcaaaattgcgatatt
tgtctcgatccgccgaaaaaatataacggcttgttggatgcgcaaaaaatcatgtcggcg
atttatcgcaccggtcaatgttatggcgcgcattatgtcatcgccgtattgcgtggcatg
aacaatcagaaaattcgtgaccaacaccatgatcaattaagcgtgtacggcattggcaaa
gaacatggcacggaatattggcagtcggtattgcgccagttggttcacttggggttggta
cgccaaatcatcggcgaatacggcaacaccttacaattaacggaaaacgccaaaccgatt
ctacgcggagaagaaccgctggaattggcaactcctcgcctgtcttccattgtcactacc
gccatgacgcccaaaagtgcggtgggttcttacgacaaagatctgtttgcccgcttgcgc
tttctgcgtaaacaaattgccgataaggaaaatattccgccgtatattgtgtttaacgac
gcaacgctacaagaaatggcgcaatatcaacctgtcagtaacattgaaatgctgcaaatc
aacggcgttggcgccattaaactggagcgtttcgggcaggcatttctcaccttgatccgc
gaacataaaagtgcccgcgccggcgaataa
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