Glutamicibacter arilaitensis: AARI_05100
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Entry
AARI_05100 CDS
T01320
Name
(GenBank) putative ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
aai
Glutamicibacter arilaitensis
Pathway
aai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AARI_05100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aai03019
]
AARI_05100
03400 DNA repair and recombination proteins [BR:
aai03400
]
AARI_05100
Enzymes [BR:
aai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AARI_05100
Messenger RNA biogenesis [BR:
aai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AARI_05100
DNA repair and recombination proteins [BR:
aai03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AARI_05100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_IclR
HEM4
Zn_ribbon_TFIIB
MRFAP1
Motif
Other DBs
NCBI-ProteinID:
CBT74737
LinkDB
All DBs
Position
548166..550286
Genome browser
AA seq
706 aa
AA seq
DB search
MDGSTQVNLKTLALQKLRALVQNPDAQFHDGQYESISALVAERRRALVVQRTGWGKSAVY
FIASLLLREQGYGPTLIVSPLLALMRDQVAAAERAGVRAAAINSANVLEWREILEKLQRD
ELDVLLVSPERLNNPSFREQQLPMLMQRLGLLVIDEAHCISDWGHDFRPDYRRIRDLIAQ
LPKGLPVLATTATANSRVVQDVAEQLGGGTEEVFTLRGTLARDSLRLGVLRLASPRMQLA
WLLSHINDFKGSGIIYTLTVSAAEDIARLLKDAGHEVAAYTGRTDLEERERLEQALKNNE
VKALIATSALGMGFDKPDLGFVLHIGAPSSPVAYYQQVGRAGRGSINADVLLLPGPDDSE
IWEYFATSSMPDQVRATQVLEALTRANGAMSVPALESAVNLRRSPLELLLKVLAVDGAVE
RVAGGWMRTDMPWVYDADRYKRVAQSRIHEQNLMVSYENTRGCRMQFLTDALDDPKSAPC
GRCDNCAGVWFDDHIPDDSKDSAQAALGRVGVPIEPRKLYPSGLDRLGHTLKGKIPVDEQ
VATGRALARLTDLGWGNRLRQVFADPTDNPIDKAMFDACVKVLAEWNWEERPVGVVAMPS
NKRPQLITSLAQGLAEVGRLCYLGQLAYRAGGPQNGPGGNSAFRVAAVADAFELPPQLEE
LIANAPGPVLLVDDLVDSRWSMAMAGRALRIAGAPGVMPFTLGVAG
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggatggctcaacgcaagtgaatctgaaaacgctagcgctgcaaaaactgcgcgcactg
gtgcaaaaccccgacgcccagtttcacgacggccaatatgaatcgattagcgccctagtg
gccgaacgccgtcgtgccctggtggtgcaacgcaccggttggggcaagtccgcggtgtac
ttcatcgcttcgctgttgctgcgcgaacagggatatggcccaaccctgattgtttcgcct
ttgctcgccttgatgcgggaccaggttgcagccgcggaacgcgcaggcgtgagggctgcg
gcaatcaattcagccaatgtgctcgaatggcgggaaattctcgaaaagctgcagcgcgat
gaactcgatgtactcctggtttctcccgaacgcttgaacaatccttccttccgcgagcag
cagctgccgatgctgatgcagcgtctgggtctgttggtaatcgatgaagcgcactgcatt
tccgactggggccatgatttccgtcctgattaccgccgcatccgcgatctgattgcccag
ttgcctaaggggctgccagttttggcgactaccgcaactgcgaacagccgagttgttcaa
gacgttgccgaacagctgggcggaggcaccgaggaggtcttcaccctgcgtggcacactg
gcccgcgactcgctgcgccttggcgttttgcgtttggcctcgccgcgcatgcagttggct
tggctgcttagccatatcaatgatttcaagggatcgggcatcatctacaccttgacggta
tctgccgctgaggacatcgcccgattgcttaaagatgccggccatgaagttgccgcttac
accgggcgcaccgatctagaagaacgcgaacgtctcgaacaggcgttgaagaacaatgaa
gtcaaagccttgattgccaccagtgccctgggcatggggtttgacaagcctgaccttgga
ttcgtcttgcacatcggtgcgcccagctcgccggtggcttattaccagcaggtgggccgt
gctggacgtggaagcatcaatgcagatgttctgttgttgcccggtccggatgactccgaa
atctgggaatacttcgccaccagctccatgcccgatcaggttcgcgccacgcaggtgctc
gaagctttgactcgggctaacggcgcgatgagcgtcccggccttggaaagcgcggtgaat
cttcgccgctcgccacttgaattgctgctgaaagttctggcggtggacggtgccgtggag
cgcgtcgccggaggttggatgcgtaccgatatgccttgggtctacgacgctgaccgctat
aagcgagtggcgcaaagccgaatccacgaacagaatctcatggtcagctacgagaacact
cgcggatgccgcatgcagttcctgactgatgccctagatgacccgaagtcagctccatgc
ggccgttgcgataattgcgctggcgtttggtttgacgaccatatccctgatgattcgaag
gacagcgcgcaggcagcacttggccgagtgggagttcccattgagccacgcaaactctac
ccatcgggtttggaccgcttaggtcataccctcaagggcaaaattccagttgatgagcag
gtcgctaccggcagagcgcttgcccgcttaaccgacttggggtggggcaatcgtttgcgc
caggtatttgccgatcccaccgacaacccgatcgacaaggccatgtttgatgcttgcgtc
aaggtgctggccgaatggaactgggaagaacgtccggtgggtgtggtggccatgccatcg
aataagcgccctcagctgatcacttcccttgcccagggattagcggaagtcggacggctg
tgttatctggggcagctcgcatatcgtgctggtggaccgcagaatggtccgggtggaaac
tctgcgttccgtgtcgctgccgttgcggatgcttttgaacttccaccgcagcttgaagaa
ctcattgccaatgcaccgggtccggtgctgctggtcgatgatttggtggattcccgttgg
tctatggcaatggccggcagggcattgcggatagctggcgcacccggtgttatgcctttc
actttgggcgtagcagggtaa
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