Aeromonas hydrophila MX16A: BOQ57_03080
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Entry
BOQ57_03080 CDS
T04629
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
aaj
Aeromonas hydrophila MX16A
Pathway
aaj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aaj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BOQ57_03080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aaj03019
]
BOQ57_03080
Enzymes [BR:
aaj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BOQ57_03080
Messenger RNA biogenesis [BR:
aaj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BOQ57_03080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
APJ13943
LinkDB
All DBs
Position
643494..644714
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AA seq
406 aa
AA seq
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MTFDELALVPALLATLPADLKCPTRVQQLAIPAALAGRDLLALARTGSGKTLAFGLPLLQ
RLDPASDRVQGLVLVPTRELAVQVSEALQGPAAGLGLRLVTLCGGVAQELQQAELALGPQ
LLVATPGRLRDLLAQQLLGLSQLRHLVLDEADRLLEMGFWPDIQWLLNAMPVERQTLLFS
ATLPAELDALATGLLTEPVRVEADPRNSVADDIEERLYLVNKSSKVPALISLLKAHEWPQ
VLVFISARDDADGVARKLAKAGIAVAALHGEKEQAVREQALGDFKAGKVQVLVATDLMAR
GIHVEALPLVINLDLPASAPVYVHRIGRTARAGRSGLAISLTCHGEADTLAAIRTLTGRE
LPLAELAGFPVTDQPASGEGKRAPRDKQANRRTQAKRSAKQFKSKS
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgatgaacttgccctcgtccccgccctgctggcgaccctgcccgccgacctc
aagtgcccgacccgggtgcagcaactggccattcccgccgcgctggcgggtcgggatctg
ctggcactggcccgcaccggcagcggcaagaccctggcattcggcctgccgctgctgcag
cgcctcgatccggccagcgatcgggtgcaggggctggtgctggtgccgacccgcgagctg
gctgtgcaggtgagcgaggcgttgcaggggccggccgccgggctgggtctgcggctggtg
accctgtgcggcggggtagcgcaggagctgcaacaggccgaactggcactggggccgcaa
ctgctggtggcgaccccggggcggctgcgggatctgctggcccagcaactgctgggactg
agccagctgcgccatctggtgctggacgaggcggatcggctgctggagatgggcttctgg
cccgacatccagtggctgctgaatgccatgccggtcgagcgtcagaccctgctgttctcg
gccaccctgccggccgagctggatgcgctggcgaccggtctgctgaccgagccggtgcgg
gtggaggcggatccccgcaacagcgtggccgacgacatcgaggagcgcctctatctggtc
aacaagagcagcaaggtgccggcgctcatcagcctgctcaaggcccacgagtggccgcag
gtgctggtcttcatcagcgcacgggacgacgcagacggggtggcccgcaagctggccaag
gcgggcattgcggtggcggcgctgcacggcgagaaggagcaggcggtacgcgagcaggcg
ctcggcgacttcaaggcgggcaaggtacaggtgctggtggccaccgacctgatggcgcgc
ggcattcacgtggaggcgctgccgctggtgatcaacctggacctgcccgccagcgccccc
gtctacgtgcaccgcatcggccgtaccgcccgggccggacgcagcgggcttgccatctcg
ctcacctgccatggcgaggccgataccctggcggcgatccgcaccctcaccggccgcgag
ctgccgctggcggagctcgccggcttcccggtcaccgatcagccagccagcggggagggc
aagcgcgccccccgtgacaagcaggccaatcgtcgtacccaggccaaacgcagcgccaaa
cagttcaagagcaagagctga
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